EST details — SGN-E280656
| Search information |
| Request: 280656 | Match: SGN-E280656 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C72363 | Clone name: cLER-1-P12 |
| ||
| Library Name: cLER | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4 weeks
Microarray: Alias clone SGN-C178682 is on microarray TOM1: SGN-S1-1-1.1.4.20
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C178682 [TUS-29-M16] | Trace: SGN-T1506 | EST: SGN-E378766 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C178682 [TUS-29-M16] | Trace: SGN-T183945 | EST: SGN-E371616 | Direction: 3' | Facility: INRA |
| Clone: SGN-C178682 [TUS-29-M16] | Trace: SGN-T183946 | EST: SGN-E371617 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E280656 | Length: 424 bp (826 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E280656 [] (trimmed)
AGATGCCAGTGGAAGATTCCAATTCAAGGAAGTAGAAGGCTCTGAAGAAATTATCGGGGCTGATCTGGTTATGCTAGCCATGGGGTTCCTTGGTC
CTGAATCGACAATAGCAGACAAACTAGGATTAGAAAAGGACAACAGGTCCAACTTCAAGGCTGATTATGGACGCTTCTCAACTAGTGTGGAGGGG
GTGTTTGCTGCAGGAGACTGTCGTAGGGGACAGTCTTTGGTGGTTTGGGCCATCTCTGAAGGACGACAAGCAGCTGCTCAAGTTGACAAGTTTCT
CATGAAGGATGACGAGGACTCGTCTGGTGATGCAGCTAGCCAACAAGAATCTGTCAAAAAGCAGCCAACAGTCGTGACATAAGACACTTGCTTTT
GGCGGAGGCTGGTTTTAGTAATCTTTCTTCAAACAACTTCCAAG
CTGAATCGACAATAGCAGACAAACTAGGATTAGAAAAGGACAACAGGTCCAACTTCAAGGCTGATTATGGACGCTTCTCAACTAGTGTGGAGGGG
GTGTTTGCTGCAGGAGACTGTCGTAGGGGACAGTCTTTGGTGGTTTGGGCCATCTCTGAAGGACGACAAGCAGCTGCTCAAGTTGACAAGTTTCT
CATGAAGGATGACGAGGACTCGTCTGGTGATGCAGCTAGCCAACAAGAATCTGTCAAAAAGCAGCCAACAGTCGTGACATAAGACACTTGCTTTT
GGCGGAGGCTGGTTTTAGTAATCTTTCTTCAAACAACTTCCAAG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E280656] | SGN-U575484 | Tomato 200607 | Build 2 | 14 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T92210 [Download][View] | Facility Assigned ID: TPRAD90TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.980 | Expected Error Rate: 0.0113 | Quality Trim Threshold: 14.5 |
Working
