EST details — SGN-C27903
| Search information |
| Request: 27903 | Match: SGN-C27903 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C27903 | Clone name: cLEF-45-P13 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C185070 is on microarray TOM1: SGN-S1-1-5.3.11.1
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C185070 [TUS-46-G20] | Trace: SGN-T196587 | EST: SGN-E395261 | Direction: 5' | Facility: INRA |
| Clone: SGN-C185070 [TUS-46-G20] | Trace: SGN-T198999 | EST: SGN-E397673 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E246585 | Length: 710 bp (858 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E246585 [] (trimmed)
AAACATATGAAATTGTGACGGAGCTATGTGAATATGCTGCAAATGTTGATATTCCCATGGCGAGAGAATCGATCAGGGCTGTCGGCAAAATAGCA
TTACAACAATATGATGTTAATGCAATTGTAGATAGGCTTCTCCAGTTTTTGGAAATGGAAAAGGACCATGTGACTGCGGAAACTCTGGTACTTGT
GAAAGATCTCCTAAGGAAATATCCTCAATGGAGCCATGATTGTATAGCAGTTGTAGGGAATATTAGTAGCAAAAATGTCCAGGAACCCAAAGCCA
AGGCAGCTCTTATCTGGATGTTGGGGGAATATGCTCAAGACATGCAAGATGCTCCGTACATATTGGAGAGTCTTATTGAGAATTGGGAAGAGGAG
CACTCCGCAGAGGTTCGTTTACATCTTCTTACAGCAGTAGTTAAGTGCTTTTTTAGAAGACCACCGGAGACTCAGAAAGCCTTGGGAGCTGCGTT
GGCTGCTGGTGTTAATGATTTTCATCAGGATGTCCATGACAGGGCATTATTATACTATAGACTTCTGCAGTACAATGTCTCCATAGCAGAGCGTG
TGGTGAATCCTCCAAAGCAAGCTGTTTCTGTCTTTGCTGATACACAAAGTAATGAAATTAAAGATCGTATCTTCGATGAGTTTAACAGCCTCTCT
GTAGTTTATCAAAAGCCTTCTTACATGTTCACTGACAAGGAACAT
TTACAACAATATGATGTTAATGCAATTGTAGATAGGCTTCTCCAGTTTTTGGAAATGGAAAAGGACCATGTGACTGCGGAAACTCTGGTACTTGT
GAAAGATCTCCTAAGGAAATATCCTCAATGGAGCCATGATTGTATAGCAGTTGTAGGGAATATTAGTAGCAAAAATGTCCAGGAACCCAAAGCCA
AGGCAGCTCTTATCTGGATGTTGGGGGAATATGCTCAAGACATGCAAGATGCTCCGTACATATTGGAGAGTCTTATTGAGAATTGGGAAGAGGAG
CACTCCGCAGAGGTTCGTTTACATCTTCTTACAGCAGTAGTTAAGTGCTTTTTTAGAAGACCACCGGAGACTCAGAAAGCCTTGGGAGCTGCGTT
GGCTGCTGGTGTTAATGATTTTCATCAGGATGTCCATGACAGGGCATTATTATACTATAGACTTCTGCAGTACAATGTCTCCATAGCAGAGCGTG
TGGTGAATCCTCCAAAGCAAGCTGTTTCTGTCTTTGCTGATACACAAAGTAATGAAATTAAAGATCGTATCTTCGATGAGTTTAACAGCCTCTCT
GTAGTTTATCAAAAGCCTTCTTACATGTTCACTGACAAGGAACAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E246585] | SGN-U576056 | Tomato 200607 | Build 2 | 19 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T61320 [Download][View] | Facility Assigned ID: TMGGW91TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.974 | Expected Error Rate: 0.0052 | Quality Trim Threshold: 14.5 |
Working
