EST details — SGN-E274160
| Search information |
| Request: 274160 | Match: SGN-E274160 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C69075 | Clone name: cLEN-8-O12 |
| ||
| Library Name: cLEN | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: red ripe to over-ripe
Microarray: Alias clone SGN-C183307 is on microarray TOM1: SGN-S1-1-8.2.3.11
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183307 [TUS-41-N9] | Trace: SGN-T199447 | EST: SGN-E398121 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183307 [TUS-41-N9] | Trace: SGN-T199547 | EST: SGN-E398221 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183307 [TUS-41-N9] | Trace: SGN-T199547 | EST: SGN-E398874 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183307 [TUS-41-N9] | Trace: SGN-T199593 | EST: SGN-E398267 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183307 [TUS-41-N9] | Trace: SGN-T200159 | EST: SGN-E398875 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E274160 | Length: 462 bp (759 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E274160 [] (trimmed)
GGAATTGCAAAAATTTGAAAGTGAATAATCTAAAGAGTAAAAATGCACAACAAATTCATATCAAATTTGAGTCATGCACTAATGTTGTAGCTTCA
AATTTGATGATCAATGCTTCAGCAAAGAGCCCAAATACTGATGGAGTCCATGTATCAAATACTCAATATATTCAAATATCTGATACTATTATTGG
AACAGGTGATGATTGTATTTCAATTGTTTCTGTATCTCAAAATGTGCAGGCCACAAATATTACTTGTGGTCCAGGTCATGGTATAAGTATTGGAA
GCTTAGGATCTGGAAATTCAGAAGCTTATGTGTCTAATGCTACTGTAAATGAAGCCAAAATTATCGGTGCCGAAAATGGAGTTAGGATCAAGACT
TGGCAGGGAGGATCTGGACAAGCTAGCAACATCAAATTTCTGAATGTGGAAATGCAAGACGTTAAGTATCCCATAATTATAG
AATTTGATGATCAATGCTTCAGCAAAGAGCCCAAATACTGATGGAGTCCATGTATCAAATACTCAATATATTCAAATATCTGATACTATTATTGG
AACAGGTGATGATTGTATTTCAATTGTTTCTGTATCTCAAAATGTGCAGGCCACAAATATTACTTGTGGTCCAGGTCATGGTATAAGTATTGGAA
GCTTAGGATCTGGAAATTCAGAAGCTTATGTGTCTAATGCTACTGTAAATGAAGCCAAAATTATCGGTGCCGAAAATGGAGTTAGGATCAAGACT
TGGCAGGGAGGATCTGGACAAGCTAGCAACATCAAATTTCTGAATGTGGAAATGCAAGACGTTAAGTATCCCATAATTATAG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E274160] | SGN-U577423 | Tomato 200607 | Build 2 | 272 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T88856 [Download][View] | Facility Assigned ID: TRRBD90TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.929 | Expected Error Rate: 0.0153 | Quality Trim Threshold: 14.5 |
Working
