EST details — SGN-E271787
| Search information |
| Request: 271787 | Match: SGN-E271787 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C65245 | Clone name: cLEM-8-M1 |
| ||
| Library Name: cLEM | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit
Development Stage: immature green fruit
Microarray: Alias clone SGN-C183205 is on microarray TOM1: SGN-S1-1-6.2.3.6
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183205 [TUS-41-J3] | Trace: SGN-T195183 | EST: SGN-E393857 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183205 [TUS-41-J3] | Trace: SGN-T195184 | EST: SGN-E393858 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183205 [TUS-41-J3] | Trace: SGN-T195818 | EST: SGN-E394492 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E271787 | Length: 708 bp (839 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E271787 [] (trimmed)
GAACACACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACGCACAAACAAAATCCAATAATCAGCTTCAAGA
TCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAA
GATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTT
AGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTG
ATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAA
AGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGA
GTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAAGAAAAATGCCAT
CTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGG
TCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAA
GATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTT
AGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTG
ATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAA
AGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGA
GTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAAGAAAAATGCCAT
CTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E271787] | SGN-U563074 | Tomato 200607 | Build 2 | 161 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T85338 [Download][View] | Facility Assigned ID: TGFBC73TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.965 | Expected Error Rate: 0.0069 | Quality Trim Threshold: 14.5 |
Working
