EST details — SGN-E271490
| Search information |
| Request: 271490 | Match: SGN-E271490 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C64340 | Clone name: cLEM-5-N24 |
| ||
| Library Name: cLEM | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit
Development Stage: immature green fruit
Microarray: Alias clone SGN-C180878 is on microarray TOM1: SGN-S1-1-5.1.17.12
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C180878 [TUS-35-I4] | Trace: SGN-T1651 | EST: SGN-E378580 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C180878 [TUS-35-I4] | Trace: SGN-T193633 | EST: SGN-E392307 | Direction: 3' | Facility: INRA |
| Clone: SGN-C180878 [TUS-35-I4] | Trace: SGN-T193634 | EST: SGN-E392308 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E271490 | Length: 519 bp (623 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E271490 [] (trimmed)
GCAGATTTGGAGGCAGTGAAACCAATAGCGGAAGCCATGTTATGCGGCAGAATGCTATTGATGATGGGTGTAAATTGGTCCTTGGTTTGGGGCCA
ACACCTACAATATGTTCTAACGACTATTATCCTGGTGGATCTAATAAAAATAAAGGGTTTACAGCCTTGTTGAATCAGGGACAATTCTCTGAGAG
TGATTCTATCCTCAAACTTGGCCTCTCAGGGAGCACCGGTGAAATTTCTAATGCACTTGACTTTTCGGCTATCACTCAGAGTACTGCTGGTGCAC
CTCATCATATCGATCAGCTGTCTTCGGATGGTAAAAGGCCGGCGGTCCCTATCCTGGACGAAGGTTCAACATCAGCCAAGAAGTCTGGTGGGTAC
ATGCCTTCACTTCTTCTGGCTCCAAGAATTGAGAACAGCCAACTATCCTTCCAAAATAAGGAAGTTTCAGAGCTGGGTGCGAAATCCCATTTCCA
TCTCCCTGAGCTGAGCTCTGAGCCTTCTTGTATCTCTGACTACT
ACACCTACAATATGTTCTAACGACTATTATCCTGGTGGATCTAATAAAAATAAAGGGTTTACAGCCTTGTTGAATCAGGGACAATTCTCTGAGAG
TGATTCTATCCTCAAACTTGGCCTCTCAGGGAGCACCGGTGAAATTTCTAATGCACTTGACTTTTCGGCTATCACTCAGAGTACTGCTGGTGCAC
CTCATCATATCGATCAGCTGTCTTCGGATGGTAAAAGGCCGGCGGTCCCTATCCTGGACGAAGGTTCAACATCAGCCAAGAAGTCTGGTGGGTAC
ATGCCTTCACTTCTTCTGGCTCCAAGAATTGAGAACAGCCAACTATCCTTCCAAAATAAGGAAGTTTCAGAGCTGGGTGCGAAATCCCATTTCCA
TCTCCCTGAGCTGAGCTCTGAGCCTTCTTGTATCTCTGACTACT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E271490] | SGN-U584619 | Tomato 200607 | Build 2 | 15 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T85295 [Download][View] | Facility Assigned ID: TGFAT84TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.975 | Expected Error Rate: 0.0029 | Quality Trim Threshold: 14.5 |
Working
