EST details — SGN-C27050
| Search information |
| Request: 27050 | Match: SGN-C27050 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C27050 | Clone name: cLEF-42-G18 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C180507 is on microarray TOM1: SGN-S1-1-8.1.19.14
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C180507 [TUS-34-I17] | Trace: SGN-T193500 | EST: SGN-E392174 | Direction: 5' | Facility: INRA |
| Clone: SGN-C180507 [TUS-34-I17] | Trace: SGN-T199207 | EST: SGN-E397881 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E247715 | Length: 584 bp (1007 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E247715 [] (trimmed)
GCTTATTATATAGTGAACAATTCTCTCTTGTAGATCACAAATCCCTTGAACAAACAAAGCAAAAACCAAATCATTTTTCTAAGTTAAAAAAAAAA
AATCTGATTTTTGTTTTTCTTACTGGAAAAAAGCTTCTTTTTTTTCCTTTCTTCATCATCTGGGTTCTAAAATAAATCAAGATTCAGGATTTTGA
TTTTGTAGTTTGAGTAAAAAGGGGGTTGATGGCTACTCGTAATTTGGAGAAATTTGCATCTATAGATGCACAGATGAGGCTTTTGGTACCTACTA
AGGTGTCTGAAGATGATATGCTTGTTGAGTATGATGCTTTGCTTTTGGATCGATTTCTTGATATTCTTGAGGATTTGCATGGAGAGGGTATCAAA
ACAACAGTCCAAGAATGTTATGAGCTTTCTGCTGAGTATGAAAACACGCATGATAAGAAGAAGCTGGAGGAGCTTGGCAGTGTGTTGACAACTTT
GGATCCAGGGGATTCAATTGTTGTTGCTAAGTCGATATCCCATATGCTTAACATGGCCAACTTGGCTGAGGAGGTTCAGATTGCCAACAGTGGGA
GGGCAAAGTCGAAA
AATCTGATTTTTGTTTTTCTTACTGGAAAAAAGCTTCTTTTTTTTCCTTTCTTCATCATCTGGGTTCTAAAATAAATCAAGATTCAGGATTTTGA
TTTTGTAGTTTGAGTAAAAAGGGGGTTGATGGCTACTCGTAATTTGGAGAAATTTGCATCTATAGATGCACAGATGAGGCTTTTGGTACCTACTA
AGGTGTCTGAAGATGATATGCTTGTTGAGTATGATGCTTTGCTTTTGGATCGATTTCTTGATATTCTTGAGGATTTGCATGGAGAGGGTATCAAA
ACAACAGTCCAAGAATGTTATGAGCTTTCTGCTGAGTATGAAAACACGCATGATAAGAAGAAGCTGGAGGAGCTTGGCAGTGTGTTGACAACTTT
GGATCCAGGGGATTCAATTGTTGTTGCTAAGTCGATATCCCATATGCTTAACATGGCCAACTTGGCTGAGGAGGTTCAGATTGCCAACAGTGGGA
GGGCAAAGTCGAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E247715] | SGN-U576244 | Tomato 200607 | Build 2 | 44 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T60759 [Download][View] | Facility Assigned ID: TMGGJ45TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.944 | Expected Error Rate: 0.0137 | Quality Trim Threshold: 14.5 |
Working
