EST details — SGN-C26445
| Search information |
| Request: 26445 | Match: SGN-C26445 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C26445 | Clone name: cLEF-40-G6 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C180415 is on microarray TOM1: SGN-S1-1-4.1.19.13
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C180415 [TUS-34-E21] | Trace: SGN-T193475 | EST: SGN-E392149 | Direction: 3' | Facility: INRA |
| Clone: SGN-C180415 [TUS-34-E21] | Trace: SGN-T199166 | EST: SGN-E397840 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E246124 | Length: 549 bp (928 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E246124 [] (trimmed)
CTGGGACTCTGTTGGGCAGAGTATATTATGAACAAGGAGGCAAAATCAGATGGATTGCTACACTAGCATAAACTGCTGGATTCCCAATTCTTCTG
CCTTTTATTTTCTATTCTGCAACCAGAAATCAAAATGAACCACCTGTGAATGCTAGTGTATTTGTTCGCGCTTCCGTTTACATCTTCCTTGGTTT
ATTTCAAGTAGTGAACTCTATGTCATTTACCGTTGGAGTACAGTACCTTCCTGCCTCTACTTATTCCCTAATTTCCGGTACTCAATTGGCGTTCA
ACGCGATCACCTCCTTCTTCCTCAACGGACACAAAATCACTGCAATTATACTCAACTCCGTCGTGCTTCTCTCCTTCTCATCCTCTGTTGTTATT
TTCCAGAATGAGACTGGTGATAGCGGTGAAATATCTCAGAAATCTCTGCTGATCGGATTTGCAGTTACAACATTCGGATCTCTAGGTTACGCATT
ACAGTTCTCATTAACAGAACTCGCATTCCAAAAGGTATTCAAAAGTATCACGTTAAAACAAGTCATGAAAATGT
CCTTTTATTTTCTATTCTGCAACCAGAAATCAAAATGAACCACCTGTGAATGCTAGTGTATTTGTTCGCGCTTCCGTTTACATCTTCCTTGGTTT
ATTTCAAGTAGTGAACTCTATGTCATTTACCGTTGGAGTACAGTACCTTCCTGCCTCTACTTATTCCCTAATTTCCGGTACTCAATTGGCGTTCA
ACGCGATCACCTCCTTCTTCCTCAACGGACACAAAATCACTGCAATTATACTCAACTCCGTCGTGCTTCTCTCCTTCTCATCCTCTGTTGTTATT
TTCCAGAATGAGACTGGTGATAGCGGTGAAATATCTCAGAAATCTCTGCTGATCGGATTTGCAGTTACAACATTCGGATCTCTAGGTTACGCATT
ACAGTTCTCATTAACAGAACTCGCATTCCAAAAGGTATTCAAAAGTATCACGTTAAAACAAGTCATGAAAATGT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E246124] | SGN-U579124 | Tomato 200607 | Build 2 | 23 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T59976 [Download][View] | Facility Assigned ID: TMGGB39TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.975 | Expected Error Rate: 0.0067 | Quality Trim Threshold: 14.5 |
Working
