EST details — SGN-E248905
| Search information |
| Request: 248905 | Match: SGN-E248905 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C28781 | Clone name: cLEF-49-D17 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C176975 is on microarray TOM1: SGN-S1-1-4.2.8.6
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C176975 [TUS-25-F13] | Trace: SGN-T181893 | EST: SGN-E368940 | Direction: 3' | Facility: INRA |
| Clone: SGN-C176975 [TUS-25-F13] | Trace: SGN-T181894 | EST: SGN-E368941 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E248905 | Length: 575 bp (897 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E248905 [] (trimmed)
AAAATGCATAAACCAAAGCAACATGCATCTTCTTAGCCATAATATATCTAACCATTTTTCTTCTTCAAAATATACCTCAACCCCTGTTTCTTCTT
CTCACCGGAATCCATTTTTTCCGTTCTTCTTCTCACCGGAATCCATTTTTCCGATAGAGAGCAAGTGAGCGAATTGCACACTATATATATATTTT
TTCATCTTTCCGTAATTATTCTGTATATAGAGTATGAAAGAAATTAGTGTTTCATCGTCATCGATAATAATATCGAAGTACGTATTTTTCATCGT
TCTCATAACAATACCGATACTCCTTTTTCTCTCTCATCGGAGTTCATCTTCTTCCGTTATCATCTCCACCACAACAACATCAAATTCCGATTCCG
ATCTCAAAATCCGTCCAGGATATTCGAGCTACGATTCCTACATTAAGAAACAGCTAAACAAAACACTCAATCCAAAACTTCGAAAAATCTGGACG
ACTCGTGATTGGGATAGAAAAATTGAAGTTTTCTCAAAATTCTTCGGAGAACTTAGAAATAGAAATTTACTCTCAGATTCATCGAAAGTACTCTG
TATTG
CTCACCGGAATCCATTTTTTCCGTTCTTCTTCTCACCGGAATCCATTTTTCCGATAGAGAGCAAGTGAGCGAATTGCACACTATATATATATTTT
TTCATCTTTCCGTAATTATTCTGTATATAGAGTATGAAAGAAATTAGTGTTTCATCGTCATCGATAATAATATCGAAGTACGTATTTTTCATCGT
TCTCATAACAATACCGATACTCCTTTTTCTCTCTCATCGGAGTTCATCTTCTTCCGTTATCATCTCCACCACAACAACATCAAATTCCGATTCCG
ATCTCAAAATCCGTCCAGGATATTCGAGCTACGATTCCTACATTAAGAAACAGCTAAACAAAACACTCAATCCAAAACTTCGAAAAATCTGGACG
ACTCGTGATTGGGATAGAAAAATTGAAGTTTTCTCAAAATTCTTCGGAGAACTTAGAAATAGAAATTTACTCTCAGATTCATCGAAAGTACTCTG
TATTG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E248905] | SGN-U567117 | Tomato 200607 | Build 2 | 12 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T62413 [Download][View] | Facility Assigned ID: TMGHM21TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.928 | Expected Error Rate: 0.0070 | Quality Trim Threshold: 14.5 |
Working
