EST details — SGN-E248546
| Search information |
| Request: 248546 | Match: SGN-E248546 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C30679 | Clone name: cLEF-59-H6 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C182524 is on microarray TOM1: SGN-S1-1-7.1.7.3
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C182524 [TUS-39-M18] | Trace: SGN-T195269 | EST: SGN-E393943 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182524 [TUS-39-M18] | Trace: SGN-T195269 | EST: SGN-E398829 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182524 [TUS-39-M18] | Trace: SGN-T195270 | EST: SGN-E393944 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182524 [TUS-39-M18] | Trace: SGN-T195271 | EST: SGN-E393945 | Direction: 5' | Facility: INRA |
| Clone: SGN-C182524 [TUS-39-M18] | Trace: SGN-T200135 | EST: SGN-E398830 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E248546 | Length: 619 bp (885 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E248546 [] (trimmed)
AGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTT
CTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAG
AGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAG
ATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACT
CGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAATATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACAT
TGGAAGTCAATCGATCAATCAAAGATAATGAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAA
AGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTG
CTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAG
AGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAG
ATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACT
CGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAATATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACAT
TGGAAGTCAATCGATCAATCAAAGATAATGAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAA
AGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E248546] | SGN-U581481 | Tomato 200607 | Build 2 | 89 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T64328 [Download][View] | Facility Assigned ID: TMGJB39TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.945 | Expected Error Rate: 0.0032 | Quality Trim Threshold: 14.5 |
Working
