EST details — SGN-E247653
| Search information |
| Request: 247653 | Match: SGN-E247653 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C26963 | Clone name: cLEF-42-C1 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C176541 is on microarray TOM1: SGN-S1-1-6.4.9.14
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C176541 [TUS-24-D11] | Trace: SGN-T1409 | EST: SGN-E378679 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C176541 [TUS-24-D11] | Trace: SGN-T193118 | EST: SGN-E391792 | Direction: 5' | Facility: INRA |
| Clone: SGN-C176541 [TUS-24-D11] | Trace: SGN-T193365 | EST: SGN-E392039 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E247653 | Length: 527 bp (953 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E247653 [] (trimmed)
TGCAATTGCTGATAACCTATGCGAGGTTTCTGCAAAAGGACAGATTCAAACAGTCTGCTGGGATAATCTTGGTCTTACACTTGCTGCAACCCTGA
ACATACTGTCTGCTAATAATCCAAGATTGCAGGCTGGTCTACCATTTGTGATGTACCCTGTCTTCTCTGTGCTTGACCTTTTTGGTATTTATCAA
GGACTAAAGCATGTGCATCTGCAGACATTAACTAAGGATAGGCTTAACATCATTATAAGCACATGGATTCAACAAGGATTTGTCCCATCTCCTGA
AGAGGTGAGTAAACAGGAGGGTATTGGCTTATCTTGGAGCAGAGGTAATTTTTAACTTAAATTTTGCCGTAACAAGGCCTTATTGCTTGGTTTAT
CGCTACATTTTTAGTAAAGGAACATTCTTAATCAGCTTTAATCAGGCAGAGAGCCATGGTCAATCAGAATTGGTTGCTTAAATCCTAGACGTTGC
ACAGCAAAGCTATTCTGTGATGACGATGCAATCTTTGAATACTGAAGACTTA
ACATACTGTCTGCTAATAATCCAAGATTGCAGGCTGGTCTACCATTTGTGATGTACCCTGTCTTCTCTGTGCTTGACCTTTTTGGTATTTATCAA
GGACTAAAGCATGTGCATCTGCAGACATTAACTAAGGATAGGCTTAACATCATTATAAGCACATGGATTCAACAAGGATTTGTCCCATCTCCTGA
AGAGGTGAGTAAACAGGAGGGTATTGGCTTATCTTGGAGCAGAGGTAATTTTTAACTTAAATTTTGCCGTAACAAGGCCTTATTGCTTGGTTTAT
CGCTACATTTTTAGTAAAGGAACATTCTTAATCAGCTTTAATCAGGCAGAGAGCCATGGTCAATCAGAATTGGTTGCTTAAATCCTAGACGTTGC
ACAGCAAAGCTATTCTGTGATGACGATGCAATCTTTGAATACTGAAGACTTA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E247653] | SGN-U563820 | Tomato 200607 | Build 2 | 3 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T60697 [Download][View] | Facility Assigned ID: TMGGI13TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.965 | Expected Error Rate: 0.0139 | Quality Trim Threshold: 14.5 |
Working
