EST details — SGN-C23579
| Search information |
| Request: 23579 | Match: SGN-C23579 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C23579 | Clone name: cLED-5-M21 |
| ||
| Library Name: cLED | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: ovary
Development Stage: 5 days pre-anthesis to 5 days post-anthesis
Microarray: Alias clone SGN-C184139 is on microarray TOM1: SGN-S1-1-8.1.16.1
This clone has been mapped as P62.
| Additional sequencing |
| Clone: SGN-C184139 [TUS-44-A1] | Trace: SGN-T1814 | EST: SGN-E378462 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C184139 [TUS-44-A1] | Trace: SGN-T197590 | EST: SGN-E396264 | Direction: 5' | Facility: INRA |
| Clone: SGN-C184139 [TUS-44-A1] | Trace: SGN-T197992 | EST: SGN-E396666 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E230981 | Length: 556 bp (811 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E230981 [] (trimmed)
GTTAGAGACAAGAAAAGAGAGAAAAATGGGAAGAGGAAGAGTAGAACTAAAGAGAATAGAGAACAAAATAAACAGGCAAGTTACTTTTGCTAAGA
GAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAGCCGCGGAAAACTCTAT
GAGTTTTCAAGTGCTTCCAGCATGATGACAACACTTGAAAAGTATCAACAATGCAGTTACGCATCTTTGGACCCGATGTTACCGGTTAGTGATAC
TCAGATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAGACATATTCTTGGAGAGGATTTGGGCACAC
TAAACTCGAAAGAACTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAGACTCAATCTATGCTGGATCAGCTG
GCAGACCTTCAAGAAAAGGAGCAAATGCTGGAAGAAGCAAATCAACAACTTAAAAACAAGCTGGGAGAAAGTGCAGCTAGA
GAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAGCCGCGGAAAACTCTAT
GAGTTTTCAAGTGCTTCCAGCATGATGACAACACTTGAAAAGTATCAACAATGCAGTTACGCATCTTTGGACCCGATGTTACCGGTTAGTGATAC
TCAGATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAGACATATTCTTGGAGAGGATTTGGGCACAC
TAAACTCGAAAGAACTTGAGCAGCTTGAGCACCAATTGGATGCATCTTTGAAGAAAGTTAGATCAAAAAAGACTCAATCTATGCTGGATCAGCTG
GCAGACCTTCAAGAAAAGGAGCAAATGCTGGAAGAAGCAAATCAACAACTTAAAAACAAGCTGGGAGAAAGTGCAGCTAGA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E230981] | SGN-U577632 | Tomato 200607 | Build 2 | 17 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T49597 [Download][View] | Facility Assigned ID: TOVAQ83TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.951 | Expected Error Rate: 0.0039 | Quality Trim Threshold: 14.5 |
Working
