EST details — SGN-E200417

Search information 
Request: 200417Match: SGN-E200417
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C3242Clone name: cLEC-1-M3
cartOrder Clone
Library Name: cLECOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: combined undifferentiated and shooting callus
Development Stage: 7-10 days post germination

Microarray: Alias clone SGN-C183761 is on microarray TOM1: SGN-S1-1-2.1.19.16
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C3242 [cLEC-1-M3] Trace: SGN-T24631 EST: SGN-E200418 Direction: 3' Facility: TIGR
Clone: SGN-C183761 [TUS-43-A7] Trace: SGN-T196170 EST: SGN-E394844 Direction: 3' Facility: INRA
Clone: SGN-C183761 [TUS-43-A7] Trace: SGN-T196171 EST: SGN-E394845 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E200417Length: 294 bp (836 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E200417 [] (trimmed) CAATTATTTCCACACCAAAAGCCAAAGATGGTTGTTCTGTGGAGCCAATTGGTCATTAAATCAGTGCTTTTAGTCTGTAGCATTATTTCTCTCTG
CTTATATAGGGGCAGAGCAGAGGTTAAAGTAGAAAATTTTAGTTTGGAAAATAAAGGGGTTGTAAGCAATAGCAAGTGCAATTTGTTTCAAGGTA
GATGGGCAATTGATCCTTCTTTTCCACTTTATGATTCCTCAAAGTGCCCTTTCATTGACCCTGAATTTGATTGCCTCAAATATGGTCGCCCTGAT
AAACAATAC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E200417] SGN-U571214 Tomato 200607 Build 2 120 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T24630 [Download][View] Facility Assigned ID: TCAAA74TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.937 Expected Error Rate: 0.0338 Quality Trim Threshold: 14.5