EST details — SGN-C185906
| Search information |
| Request: 185906 | Match: SGN-C185906 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C185906 | Clone name: TUS-48-J16 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C185906 is on microarray TOM1 spot ID 1-1-1.2.7.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C72077 [cLER-1-B23] | Trace: SGN-T92138 | EST: SGN-E280584 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C185906 [TUS-48-J16] | Trace: SGN-T197791 | EST: SGN-E396465 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378655 | Length: 385 bp (1118 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378655 [] (trimmed)
TTTAAAAAAATGTCACAATTTTAACGGGATTGGGCCCCCCAAAAATAACCCCTTTTGGCTCCTTGGGGCAAAAAAAAAAAAGGGGTTTTTTAATT
TTAGGAAATGGGGACCATTGGGCCAATTTGGGGCAAGGCAAAAAAACCCAACCCCCCCCGGGGTTTTTTCCGGGGTTAAGGGAAAAAAAACCTGG
AAATTCCCCCCCTTGGGAAAAAGGGGGGAAAAAACTTTTTGGGGGGGGGGGGGCCCCCAAAAAAAAAAAAAAAAAACCGGGCGGGGGGGGCCCTT
AAAAAATAGGGGCCCCCCCGGGGGGGGGAAATTTAAAAAAAAGTTTTTCCCCCCCCCCCCCCCCGGGGGGGGGCCCGGGCCCCATTTCCCCCTAA
GGGGG
TTAGGAAATGGGGACCATTGGGCCAATTTGGGGCAAGGCAAAAAAACCCAACCCCCCCCGGGGTTTTTTCCGGGGTTAAGGGAAAAAAAACCTGG
AAATTCCCCCCCTTGGGAAAAAGGGGGGAAAAAACTTTTTGGGGGGGGGGGGGCCCCCAAAAAAAAAAAAAAAAAACCGGGCGGGGGGGGCCCTT
AAAAAATAGGGGCCCCCCCGGGGGGGGGAAATTTAAAAAAAAGTTTTTCCCCCCCCCCCCCCCCGGGGGGGGGCCCGGGCCCCATTTCCCCCTAA
GGGGG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378655] | SGN-U603923 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1910 [Download][View] | Facility Assigned ID: TUS48J16.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.700 | Expected Error Rate: 0.0222 | Quality Trim Threshold: 20.5 |
Working
