EST details — SGN-C185540

Search information 
Request: 185540Match: SGN-C185540
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C185540Clone name: TUS-47-K10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185540 is on microarray TOM1 spot ID 1-1-7.3.9.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C75752 [cLES-15-F11] Trace: SGN-T100825 EST: SGN-E287320 Direction: 5' Facility: TIGR
Clone: SGN-C185540 [TUS-47-K10] Trace: SGN-T192198 EST: SGN-E390872 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E390636Length: 644 bp (881 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E390636 [] (trimmed) CAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGG
GAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACA
GTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACT
TAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTT
TGATTGGTCAGCCTAGTAAGAAATATCTTTGGATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAA
GAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTG
GTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTTAAACCCATAGCTAAATAAATTTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390636] SGN-U578306 Tomato 200607 Build 2 35 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191962 [Download][View] Facility Assigned ID: FA0AAD35BF05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.938 Expected Error Rate: 0.0053 Quality Trim Threshold: 14.5