Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-C185463

Search information 
Request: 185463Match: SGN-C185463
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C185463Clone name: TUS-47-H5
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185463 is on microarray TOM1 spot ID 1-1-4.4.10.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C78406 [cLES-5-J1] Trace: SGN-T98144 EST: SGN-E285661 Direction: 5' Facility: TIGR
Clone: SGN-C185463 [TUS-47-H5] Trace: SGN-T192612 EST: SGN-E391286 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E396341Length: 618 bp (919 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E396341 [] (trimmed) CTATACATTTTTCATTTCTGTATCAATCAATATTCTTTGTTTCTGCTGTTTTGAGTAAATCACACTAAGATGTGTGGTGGTGCAATTCTTGCTGA
TATCATTCCTCCTCGTGACCGCCGTTTGTCATCCACCGACCTATGGCCGACTGATTTCTGGCCAATTTCCACCCAAAATGTTCCTCTCAACCCCA
AACGAGCTCGACCCTCTACAGGTGGTGAGCAGATGAAGAAGAGGCAAAGGAAGAATCTTTACAGAGGGATAAGACAACGTCCATGGGGTAAATGG
GCTGCTGAAATTCGTGACCCGAGAAAAGGGGTTAGGGTTTGGTTAGGTACTTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATAGAGAAGC
TCGTAAAATCAGGGGTAAGAAAGCTAAAGTTAATTTCCCCAATGAAGATGACGACCATTACTGCTACAGTCATCCAGAGCCCCCTCCCTTGAACA
TTGCTTGTGATACTACTGTTACTTACAATCAAGAATCANATAACTGTTACCCCTTTTACTCAATCGAGAACGTTGAACCTGTTATGGAATTTGCA
AGTTATAATGGAATTGAAGATGGAAGAGAGGAAATGGTGAAAAATTTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396341] SGN-U584756 Tomato 200607 Build 2 37 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197667 [Download][View] Facility Assigned ID: FA0AAD35CD03RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.982 Expected Error Rate: 0.0057 Quality Trim Threshold: 14.5