EST details — SGN-C185411

Search information 
Request: 185411Match: SGN-C185411
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C185411Clone name: TUS-47-F1
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185411 is on microarray TOM1 spot ID 1-1-8.2.10.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C72036 [cLER-19-P2] Trace: SGN-T96662 EST: SGN-E285090 Direction: 5' Facility: TIGR
Clone: SGN-C185411 [TUS-47-F1] Trace: SGN-T192318 EST: SGN-E390992 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E390993Length: 590 bp (917 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E390993 [] (trimmed) AATACATTCTTTGAAATACAAAAATGGTAGATGAAGTTAAGTTGCTTGGTGTTAGTGGCAGTTCTTATAGTCGTCGAGTTGAATGGGCTTTGAGA
GTTAAAGGAGTGAAATATGAATTTATAGAAGAAGATCTACAAAACAAAAGCCCTCTACTTCTTGAATCGAATCCCGTCCTTAAGAAAATCCCAGT
ACTAATTCACAATGGAAAGTCCATTTGTGAGTCTATGGTGATTGTTGAATACATTGATGAGACATTTGAAGGCCCGTCCATTTTGCCTAAAGACC
CTTATGATCGAGCTATTGCACGTTTCTGGGCTACGTTTCTTGATGGAATGTGCTTGGATGCAGTGAGGAAAGGTCTATGGAGCAAAAGAGAGGAA
AAAGAGAAAAACATACAAGAAGAAGCTTATGAGATGCTAAAAATTGTTGACAATGAACTTAAGGACAAGAAGTTTTTTAGTGGAGATAAAATTGG
ATTTGTTGATGTTGCTGCAAATTACATCCCATTTTGGGTTGAAATTGTTGAAGAAGCTACTGGAAATGTGTTGATTACAAGTGAAAAGTTTCCTA
ATTTGTGTGCTTGGATAGAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390993] SGN-U578214 Tomato 200607 Build 2 7 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T192319 [Download][View] Facility Assigned ID: FA0AAD35CC01RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.943 Expected Error Rate: 0.0019 Quality Trim Threshold: 14.5