EST details — SGN-C185076

Search information 
Request: 185076Match: SGN-C185076
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C185076Clone name: TUS-46-H2
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185076 is on microarray TOM1 spot ID 1-1-7.4.12.14 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C87004 [cLET-45-A11] Trace: SGN-T111698 EST: SGN-E300526 Direction: 5' Facility: TIGR
Clone: SGN-C185076 [TUS-46-H2] Trace: SGN-T192258 EST: SGN-E390932 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E390680Length: 588 bp (858 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E390680 [] (trimmed) TGGCCGTGGACAATTAAGTCCGCAGGAGCAGAAAACGGTGGATGCAATCGTACAAGCAAGCAAGTTTCCCTTGTCAATTATACTGGTTGGGGTTG
GCGATGGACCGTGGGATATGATGAAGGAATTTGATGATAATATTCCTGCTAGGGACTTCGATAATTTCCAGTTCGTCAATTTCACGGACATAATG
GCCAAAAATGTGCCTCAATCTCGAAAGGAGACGGAGTTTGCGCTTTCAGCATTGATGGAAATCCCTTCACAATACAAAGCGACGATGGAACTTAA
CTTACTGGGTGGACAAAGTGGAAAATCTGTCAATAGGGTAGCTCTTCCTCCTCCTATGTATGGGGCAAGTTCTGTCGGTGGTTCAAAGACCTCAC
ATGCACCAAGTTTTCAGCAGCCTGCAAGCTCGTATTATGGTTATGGAAGCCCTGCAGATGCAGAACCACATTTTCAGCCGACTTCAAGTTCTTAC
TACGACAGTGCTCGCCCAGTTGACAATGCTCCATCTGCTCCGAGTTCGCCCTACACTGCTCCCAGTTCTACCTATGACAATCAGGTTTGCCCCAT
TTGTCTTACTAACCCAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390680] SGN-U577065 Tomato 200607 Build 2 35 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T192006 [Download][View] Facility Assigned ID: FA0AAD34DD01RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.984 Expected Error Rate: 0.0015 Quality Trim Threshold: 14.5