EST details — SGN-C184139
| Search information |
| Request: 184139 | Match: SGN-C184139 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C184139 | Clone name: TUS-44-A1 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C184139 is on microarray TOM1 spot ID 1-1-8.1.16.1 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C23579 [cLED-5-M21] | Trace: SGN-T49597 | EST: SGN-E230981 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C184139 [TUS-44-A1] | Trace: SGN-T197590 | EST: SGN-E396264 | Direction: 5' | Facility: INRA |
| Clone: SGN-C184139 [TUS-44-A1] | Trace: SGN-T197992 | EST: SGN-E396666 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378462 | Length: 421 bp (1492 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378462 [] (trimmed)
ATCCCCCGGAGCATGCAGGGTTTTCGCCAAGAAAAGAGAGAAAAATGGGAAGAGGAAGAGTAGAACTAAAGAGAATAGAGAACAAAATAAACAGG
CAAGTTACTTTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTC
TAGCCGCGGAAAACTCTATGAGTTTTCAAGTGCTTCCAGCATGATGACAACACTTGAAAAGTATCAACAATGCAGTTACGCATCTTTGGACCCGA
TGTTACCGGTTAGTGATACTCAGATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAGACATATTCTT
GGAGAGGATTTGGGCACACTAAACTCGAAAGAACTTGAGCA
CAAGTTACTTTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTC
TAGCCGCGGAAAACTCTATGAGTTTTCAAGTGCTTCCAGCATGATGACAACACTTGAAAAGTATCAACAATGCAGTTACGCATCTTTGGACCCGA
TGTTACCGGTTAGTGATACTCAGATGAACTACAATGAGTATGTGAGGCTAAAAGCTAGAGTTGAGCTCCTTCAACGTTCTCAAAGACATATTCTT
GGAGAGGATTTGGGCACACTAAACTCGAAAGAACTTGAGCA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378462] | SGN-U577632 | Tomato 200607 | Build 2 | 17 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1814 [Download][View] | Facility Assigned ID: TUS44A1.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.956 | Expected Error Rate: 0.0016 | Quality Trim Threshold: 20.5 |
Working
