Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-C183371

Search information 
Request: 183371Match: SGN-C183371
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C183371Clone name: TUS-42-A1
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183371 is on microarray TOM1 spot ID 1-1-8.1.2.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C71997 [cLER-19-N13] Trace: SGN-T96613 EST: SGN-E285041 Direction: 5' Facility: TIGR
Clone: SGN-C183371 [TUS-42-A1] Trace: SGN-T195467 EST: SGN-E394141 Direction: 3' Facility: INRA
Clone: SGN-C183371 [TUS-42-A1] Trace: SGN-T196629 EST: SGN-E395303 Direction: 3' Facility: INRA
Clone: SGN-C183371 [TUS-42-A1] Trace: SGN-T196629 EST: SGN-E399115 Direction: 3' Facility: INRA
Clone: SGN-C183371 [TUS-42-A1] Trace: SGN-T200447 EST: SGN-E399551 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E394609Length: 656 bp (824 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E394609 [] (trimmed) TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACAC
TTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAA
GTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATA
GAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAA
ACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTAGTTAGATTACTAGTTTGCTATTATATACAATTTTCCC
AAGAGCTTGTATAAAATGGAGAGAAGGAAAAAGATTTAGAATTATCGCTTGTGAATGACAAGAAAAGATTGCAAAATAAGAATTTAGTTGTTTTG
CTTTAATAAGTTCCTTAATCATTTCATTAGGGGTGTAATAATAGAATAAGAAAAGGGGCTTGAATTTCACCTATAAACCACCACGG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394609] SGN-U580684 Tomato 200607 Build 2 40 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195935 [Download][View] Facility Assigned ID: FA0AAD30AA01RM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.928 Expected Error Rate: 0.0025 Quality Trim Threshold: 14.5