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EST details — SGN-C183242

Search information 
Request: 183242Match: SGN-C183242
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C183242Clone name: TUS-41-K16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183242 is on microarray TOM1 spot ID 1-1-1.3.3.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C80386 [cLET-12-B17] Trace: SGN-T105459 EST: SGN-E292996 Direction: 5' Facility: TIGR
Clone: SGN-C183242 [TUS-41-K16] Trace: SGN-T199479 EST: SGN-E398153 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E395188Length: 669 bp (846 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E395188 [] (trimmed) GCTATACGAGGTCATGGCAACCAAGAGTAAGATTTACTTTGTGATCGAACATGCCAAAGGTGGCGAGCTTTTCAACAAACTGACAAAGGGGAGGC
TCACAGAAGATGTTGCTAGAAAGTTGTTTCAGCAACTGATCAATGCAGTTGAATTTTGCCACAGCCGAGGTGTTTATCACCGTGATCTCAAACCG
GAAAATCTCCTACTGGATGAGAATGGAAACCTAAAGGTCTCAGACTTTGGTTTGAGTGCATTAGCAGAGTCTAAGCGACAAGATGGGTTACTCCA
CACAACCTGTGGTACACCAGCATATGTTGCTCCCGAGGTGATTGGTAGAAAAGGATATGAGGGTGCTAAAGCTGACATCTGGTCTTGTGGGGTGA
TTTTATTTGTCTTGTTGGCTGGTTATCTTCCATTCTATGACTTAAATCTTATGAATCTGTATAGGAAGATATGCAGGGCAGAGTACAAATGCCCT
AATTGGTTCCCTCTAGAAGTGCGTAAACTTCTCTCTAGGATCTTCGACCCAAACCCTCGTAAAAGGATTTCAATCGCCAAAATTAAGGAAAGCTC
CTGGTTTAAGAAAGGATTGGAATCTAGACATGTGGGAACTAAACAAGTAGTGAACCAAAATGTTATTGCAGATGGTAATGCTGTTTCAAGTTCAA
ATTC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395188] SGN-U572172 Tomato 200607 Build 2 62 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196514 [Download][View] Facility Assigned ID: FA0AAD29BF08RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.973 Expected Error Rate: 0.0045 Quality Trim Threshold: 14.5