EST details — SGN-C183040

Search information 
Request: 183040Match: SGN-C183040
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C183040Clone name: TUS-41-C6
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183040 is on microarray TOM1 spot ID 1-1-3.3.3.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C24968 [cLEE-1-C1] Trace: SGN-T58539 EST: SGN-E244090 Direction: 5' Facility: TIGR
Clone: SGN-C24968 [cLEE-1-C1] Trace: SGN-T58540 EST: SGN-E244091 Direction: 3' Facility: TIGR
Clone: SGN-C183040 [TUS-41-C6] Trace: SGN-T191743 EST: SGN-E390417 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E390418Length: 496 bp (853 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E390418 [] (trimmed) CAGCCTGCTTCTGCGCCTAACTGCAGAATACACCGTTTTCGGCAGGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAA
CTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAG
AAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAAAAAAAAAAAAAAACTCGAGCTGCTTACCA
GCGAAAATCAACCTCTGCTGGTCTGAAGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCAATGGTGTCGGAGCTTTCCACCTCCAA
AGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAAATCTGCATACCACCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGT
AGTCAGCCAGGGTGCGACCAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390418] SGN-U577265 Tomato 200607 Build 2 21 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191744 [Download][View] Facility Assigned ID: FA0AAD29BB03RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.959 Expected Error Rate: 0.0013 Quality Trim Threshold: 12.5