Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-C179515

Search information 
Request: 179515Match: SGN-C179515
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C179515Clone name: TUS-31-P9
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C179515 is on microarray TOM1 spot ID 1-1-8.4.2.14 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C82344 [cLET-1-K2] Trace: SGN-T102631 EST: SGN-E292357 Direction: 5' Facility: TIGR
Clone: SGN-C179515 [TUS-31-P9] Trace: SGN-T185522 EST: SGN-E373384 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E373385Length: 371 bp (910 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E373385 [] (trimmed) CTACGATGGCAGATACTGGACCATGTGGAAGTTGCCCATGTTCGGGTGCACTGATGCAACCCAGGTCTTGGCTGAGGTGCAGGAGGCAAAGAAGG
CTTACCCACAGGCATGGGTCCGTATCATCGGATTCGACAATGTTCGTCAAGTGCAGTGCATCAGTTTCATCGCTTACAAGCCCGAAGGATACTAA
GTTCTAGAAAAACTAATTGCCCTATGTTTATAGGGACAGTTTGTTTGAATTCTCCTTTGGGTTTTCCCTTGAGAAATTGTATTCATTTTCCCTTG
TTTTCCATCTTTTTATTCCGTGTATGATTAATTCGAATTTCAATCAAGTTTACAAGAACTATATTAATGATATTTGTTTCTTTACT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E373385] SGN-U580869 Tomato 200607 Build 2 1124 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T185523 [Download][View] Facility Assigned ID: FA0AAD19CH05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.962 Expected Error Rate: 0.0000 Quality Trim Threshold: 12.5