EST details — SGN-C179322
| Search information |
| Request: 179322 | Match: SGN-C179322 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C179322 | Clone name: TUS-31-H8 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C179322 is on microarray TOM1 spot ID 1-1-1.4.2.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C77351 [cLES-20-K3] | Trace: SGN-T102014 | EST: SGN-E290335 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C179322 [TUS-31-H8] | Trace: SGN-T185650 | EST: SGN-E373512 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E373513 | Length: 693 bp (922 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E373513 [] (trimmed)
TTTTTACAGTAATCGAAGGAATTGTTAAAGAAAAAAAAAAAAAGAGGAGAAAAATGGCAGAGCAGCTGACGGAGGAGCAGATCGCTGAGTTCAAG
GAAGCTTTTAGCCTTTTCGACAAGGATGGCGATGGCTGTATTACTACCAAGGAGTTGGGAACAGTGATGAGATCACTTGGTCAGAATCCCACTGA
AGCTGAACTACAGGATATGATCAGTGAAGTTGATGCTGATCAGAATGGAACCATTGATTTTCCAGAGTTCTTGAATCTGATGGCACGGAAGATGA
AGGACACTGATTCTGAGGAAGAACTCAAAGAGGCTTTTAAGGTTTTTGATAAAGATCAGAATGGCTTTATTTCTGCAGCTGAGCTTCGTCATGTA
ATGACAAACCTTGGAGAGAAGCTGACTGATGAAGAGGTGGATGAGATGATCCGAGAGGCAGATATTGATGGTGATGGACAAGTTAATTATGAGGA
GTTTGTCCGTATGATGCTTGCCAAGTGATGACTTTAAGATTCTGTTAGCTACTATGTAATCTATGATAGCTGCTCAGTTAGTTACTACAACTTAT
AGCTGGCAGACTCAGGAGCGGTTCAAGTATATTAGTGGCCTAAAGCGGCTCCTTAAACTTGAATTGTTAATAACTTTTGTATAACTGATTTCTTC
TAGTTTTACCTGCATCTTGACTCCTTTC
GAAGCTTTTAGCCTTTTCGACAAGGATGGCGATGGCTGTATTACTACCAAGGAGTTGGGAACAGTGATGAGATCACTTGGTCAGAATCCCACTGA
AGCTGAACTACAGGATATGATCAGTGAAGTTGATGCTGATCAGAATGGAACCATTGATTTTCCAGAGTTCTTGAATCTGATGGCACGGAAGATGA
AGGACACTGATTCTGAGGAAGAACTCAAAGAGGCTTTTAAGGTTTTTGATAAAGATCAGAATGGCTTTATTTCTGCAGCTGAGCTTCGTCATGTA
ATGACAAACCTTGGAGAGAAGCTGACTGATGAAGAGGTGGATGAGATGATCCGAGAGGCAGATATTGATGGTGATGGACAAGTTAATTATGAGGA
GTTTGTCCGTATGATGCTTGCCAAGTGATGACTTTAAGATTCTGTTAGCTACTATGTAATCTATGATAGCTGCTCAGTTAGTTACTACAACTTAT
AGCTGGCAGACTCAGGAGCGGTTCAAGTATATTAGTGGCCTAAAGCGGCTCCTTAAACTTGAATTGTTAATAACTTTTGTATAACTGATTTCTTC
TAGTTTTACCTGCATCTTGACTCCTTTC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E373513] | SGN-U580544 | Tomato 200607 | Build 2 | 34 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T185651 [Download][View] | Facility Assigned ID: FA0AAD19DD04RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.954 | Expected Error Rate: 0.0051 | Quality Trim Threshold: 14.5 |
Working
