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EST details — SGN-C178499

Search information 
Request: 178499Match: SGN-C178499
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C178499Clone name: TUS-29-F1
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C178499 is on microarray TOM1 spot ID 1-1-8.2.4.14 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C72135 [cLER-1-E16] Trace: SGN-T91910 EST: SGN-E280356 Direction: 5' Facility: TIGR
Clone: SGN-C178499 [TUS-29-F1] Trace: SGN-T184048 EST: SGN-E370979 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E370980Length: 632 bp (895 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E370980 [] (trimmed) TTTTGGTTCAAGGAGTTCATCCGAATCCTTTTTGACGGAAAATTATATTATTTATATATTATTAAAATAATATTTTATGTATGTATAGTAGATGT
CAAAATCCTTTCGACTAATCCGTGTGTTTATTTCTACGAATTTTGAACTCCTTTATTGAAAATTATGACGAGCATGATTCAGTTGCTGAAGCCTG
GCTGTTTCGATTTTGATTTCATTTTCTCCATTTGCAGTGAGATTTCAATTTCAAAGATAAAATATATTATGACAGACAGTATTGATGGATGTCTC
TTTTTGAACTAAATTGTTCTTCTATTTTTTCAGCTTATTTTTCTAATTTTTTTTACATAATTAATAGATGAATAATGGGACCAAACTCAGTAACA
ATCAATTATAAATGTATTATAATGATATTTAGTTTGATTTTAATAATAACGAAATTGATTTGATTGTTACTACCAATCAAAACTGCTTATAAACA
CCTCTATTAATCAGTATAAAATAACTTATGAGCGTGAATTTTAACTTGGTAGGAAAAATTAACTTCATGCCTTGTTATTAGTTTAGTATATTCTC
TTGCACATAACGCTAAATTAACATGCAATAACAAATAACCGTTCTTTACAAATTTGATTTCG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E370980] SGN-U603852 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T184049 [Download][View] Facility Assigned ID: FA0AAD17CC01RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.904 Expected Error Rate: 0.0047 Quality Trim Threshold: 14.5