EST details — SGN-C178129

Search information 
Request: 178129Match: SGN-C178129
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C178129Clone name: TUS-28-F15
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C178129 is on microarray TOM1 spot ID 1-1-2.2.4.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C64593 [cLEM-6-J19] Trace: SGN-T84477 EST: SGN-E270721 Direction: 5' Facility: TIGR
Clone: SGN-C178129 [TUS-28-F15] Trace: SGN-T183484 EST: SGN-E371124 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E371125Length: 678 bp (898 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E371125 [] (trimmed) GGAGATGTCCATCTTATTACAAAAAAATTGTGGATTTTAAGACATGGGAAATAGGATATCAACATTGTAGAGCTTCAATTGCTATCCTTGCTAAT
GTCTTACTCCATGTTTCTGATTTTAAAATGATAATGCTATATTGTTCGTGTTGCTTTGCTGAGTACTTTCTATTTTGTATGTCGTGCTAAGAGTG
AAATATGATATGAACGTGATAACTAAGAGCTACCTTTTACTGCTATGCATCATGTAACAAATTATATTACAGTATACCTATTGACAGAATTAGCG
AAGCCTTGTGTCTCCAAACTAAGTGAAACATATTTGAGTGAACAACTTCATCTTTTTCCTTTATCTAACATGCATATGACTTGCGTGAAACTGCA
CACCAGGTTTGCAATTCACATCCATCTTTCTACCTGATTTAATTTCTTAGATAATTGCAATCTTTGGTAACACTTTCCCTCGGTATTATCCAACA
CATAGTTGTTATGATATTTACCGAGTATTTCACTTAACTTGCTCCCTATCGTCCATAGCTGAGGAAATCATAGCATGCTCTGATAACTGAGTTAA
TTGTTTCTTGAGGATGAGCTTGTCATTCATAGGAGTAATCTGGATATAAAAACTTTGAATAGGACAAAATGTCATAGTTGGTGGTCCTCAAAGAT
ATCAATATGTATG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E371125] SGN-U580153 Tomato 200607 Build 2 15 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T183485 [Download][View] Facility Assigned ID: FA0AAD16CC08RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.946 Expected Error Rate: 0.0173 Quality Trim Threshold: 14.5