Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-C177285

Search information 
Request: 177285Match: SGN-C177285
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C177285Clone name: TUS-26-C11
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C177285 is on microarray TOM1 spot ID 1-1-6.3.7.20 [Order] [Tomato Microarray Database]
See unigene SGN-U569783 for alternative clones/ESTs which are mapped
Additional sequencing 
Clone: SGN-C34465 [cLEG-30-P22] Trace: SGN-T69297 EST: SGN-E255571 Direction: 5' Facility: TIGR
Clone: SGN-C177285 [TUS-26-C11] Trace: SGN-T182260 EST: SGN-E368850 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E368851Length: 569 bp (924 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E368851 [] (trimmed) TGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTC
GTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGCTTGTACAAAGGCTTG
GTACCTCTTTGGGGACGTCAGATTCCATATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAA
GCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTG
CTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGT
CTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCTGCCAACAACTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E368851] SGN-U569783 Tomato 200607 Build 2 86 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T182261 [Download][View] Facility Assigned ID: FA0AAD14AB06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.981 Expected Error Rate: 0.0018 Quality Trim Threshold: 14.5