EST details — SGN-C175942

Search information 
Request: 175942Match: SGN-C175942
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C175942Clone name: TUS-22-K12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175942 is on microarray TOM1 spot ID 1-1-5.3.11.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C17447 [cLED-19-L16] Trace: SGN-T53498 EST: SGN-E237584 Direction: 5' Facility: TIGR
Clone: SGN-C175942 [TUS-22-K12] Trace: SGN-T180575 EST: SGN-E368096 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E368097Length: 570 bp (935 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E368097 [] (trimmed) ATACAGTTAAGATTGAGAAATGGATGAAGATACAGAAAGAAAAAAGGATTTATGAATTGGGATCATTGCCACCATTTATGTTGGTATTTGGAGGG
GAAATTGAAAGAATTGATCATAGATGGAATCAACATGGGCTTGGTGGAGATAATTTGGTGAATAGTTGTAGAACATTGCATCCAGGTCCAGTCAG
TTTGTTGCATTGGAGTGGTAAAGGGAAACCTTGGGTCAGGCTTGATCAAGGGAGTCCTTGTCCTGTTGATCTTTTATGGATGCCTTATGATCTGT
ATAGACTTAGCTCAATTGATTCTTTGGGCGATCAAGAGCGAAGAGCTATGATTTGATTGTTTAAGCACCAGTAAGTGTATAGAAGTTAAAACTCT
TTAGCGATTCTTTTTCTACATTGTGAAGAAGTGAGAACTTAGATCCAGTATTAAGTACAGGGGACGATTTTGATGAGTCCCTTGTGAGTGATTTC
TTTTGTGTATAAGAGCAAATTATTTGTGTAAAGCGATTATTCATTCATTATATTTGTGATAATCTGAGTATTCATTTGATAACTTTTTAATTTTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E368097] SGN-U571118 Tomato 200607 Build 2 17 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T180576 [Download][View] Facility Assigned ID: FA0AAD10BF06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.934 Expected Error Rate: 0.0071 Quality Trim Threshold: 12.5