Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-C175535

Search information 
Request: 175535Match: SGN-C175535
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C175535Clone name: TUS-21-J13
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175535 is on microarray TOM1 spot ID 1-1-4.2.13.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C15435 [cLED-11-O24] Trace: SGN-T51344 EST: SGN-E235334 Direction: 5' Facility: TIGR
Clone: SGN-C175535 [TUS-21-J13] Trace: SGN-T190599 EST: SGN-E377837 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E377838Length: 684 bp (933 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E377838 [] (trimmed) AAGACATTAAGGAGACTTGCTCAGAATAGAGAGGCAGCAAGGAAAAGCAGAATTAGGAAAAAGGCTTATGTTCAACAGCTAGAGACAAGTAGAAT
AAGGCTCACTCAATTGGAGCATGAAATACAAAGAGCCAGATCTCAAGGATTTCATGTTGGAGGAAATGTTCTTCTAGGAGGAGACCAAGGCTTTC
AACTTATTAATAGGACCAATATCAGCTCAGATGCTGCAGTATTCGATTTGGAGTATGCAAGATGGCTGGAAGAACATCATCGACTCATATGTGAA
CTTAGAAATGCAGTACATGAAGAACAATTGCAGGAGGATGAACTTCGTATTTACGTCGAAAATTGTGTGGTACATTATGACAATATAATGAACTT
GAAGGGCATGCTTGCAAAATCTGATGTGTTTCATTTGGTTTCTGGCTTGTGGAAGTCTCCCGCTGAACGTTGCTTCTTGTGGATTGGCGATTTTC
GTCCATCCGAAATTCTCAAAATTATAATGTGTCAAATAGAGGCACTAACAGAAAACCAATTGTTGGGAATGTGTGGATTACAAAAATCAACACAA
GAAGCTGAGGATGCTTTGTCACAAGGATTAGAGACTTTGAACCAGTCATTATCAGATACAATAATTGCCTCAGATGCATTAATATTGGGTAATAA
TAATGAAAATATGGGAAAC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377838] SGN-U574124 Tomato 200607 Build 2 7 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T190600 [Download][View] Facility Assigned ID: FA0AAD9CE07RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.954 Expected Error Rate: 0.0043 Quality Trim Threshold: 14.5