EST details — SGN-C175191
| Search information |
| Request: 175191 | Match: SGN-C175191 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C175191 | Clone name: TUS-20-L5 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C175191 is on microarray TOM1 spot ID 1-1-4.4.14.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C24072 [cLED-7-C12] | Trace: SGN-T50348 | EST: SGN-E231839 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C175191 [TUS-20-L5] | Trace: SGN-T190073 | EST: SGN-E377574 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378510 | Length: 894 bp (1128 bp untrimmed) |
| Status: Current Version | Direction: 5' |
>SGN-E378510 [] (trimmed)
TCCCCCGGTTTGCATGAATTCGGAACCAGTGATGGTAAAACCCTTTATTCCTCAACATTTGCTTGGAACAAAGTTGCAAATGTGATGTTCCTAGA
GTCACCAGCAGGGGTTGGCTTCTCCTATTCCAATACTAGCTCAGATTATGCACAATCAGGCGACAAGAGGACTGCTCAAGATGCATATAGGTTTC
TAGTGAATTGGTTCAAGAGGTTTCCACATTACAAAAGCAGGGATTTTTACATCATGGGAGAAAGTTATGCAGGATTCTATGTGCCAGAGCTAGCA
GACATCATTGTCAAGAGCAACATGCTAGCAACCACAAACTCCAAGATCCAATTCAAAGGAATCATGATAGGAAATGGTATAATGAACGATGTCAC
AGATGAGAAAGGGCAATTAGATTATTTATGGAGTCATGCACTAATCTCTGATGAGACTCATTTAGGCATCCAACAACATTGCAAAACCCAAACTG
ATGAGACAAAAATATGTGAACAATTTCAAAGCACAGCTCAAACTGAGTTTGGAAACATAGATCCTTACAACATCTATGGTCCAATTTGTCCCCTT
GATGACGACGATTCATCATCATCATCATCGTCATCAAGAAGAAGAATATTCAAGAAAAATGGATATGATCCTTGTGAACAACATTATGTTCGCCA
TTATCTCAATCTTCCTCAAGTTCAAAAGTCTTTGCATGCCAACCTTCCTAACCGTTGGGAATCTTGCAGTGATCTGACATGGAAGGATAGTCCAT
CAAGTATGTTTCCAATATACAATAGACTAATTTCATCTGGTCTCAGGATACTTCTTTTCAGTGGAGATGTAGATGCAGTAGTTTCAGTAACTTCA
ACTCGTTATAGCATTAGTGCAATGAACCTTACAGTCATC
GTCACCAGCAGGGGTTGGCTTCTCCTATTCCAATACTAGCTCAGATTATGCACAATCAGGCGACAAGAGGACTGCTCAAGATGCATATAGGTTTC
TAGTGAATTGGTTCAAGAGGTTTCCACATTACAAAAGCAGGGATTTTTACATCATGGGAGAAAGTTATGCAGGATTCTATGTGCCAGAGCTAGCA
GACATCATTGTCAAGAGCAACATGCTAGCAACCACAAACTCCAAGATCCAATTCAAAGGAATCATGATAGGAAATGGTATAATGAACGATGTCAC
AGATGAGAAAGGGCAATTAGATTATTTATGGAGTCATGCACTAATCTCTGATGAGACTCATTTAGGCATCCAACAACATTGCAAAACCCAAACTG
ATGAGACAAAAATATGTGAACAATTTCAAAGCACAGCTCAAACTGAGTTTGGAAACATAGATCCTTACAACATCTATGGTCCAATTTGTCCCCTT
GATGACGACGATTCATCATCATCATCATCGTCATCAAGAAGAAGAATATTCAAGAAAAATGGATATGATCCTTGTGAACAACATTATGTTCGCCA
TTATCTCAATCTTCCTCAAGTTCAAAAGTCTTTGCATGCCAACCTTCCTAACCGTTGGGAATCTTGCAGTGATCTGACATGGAAGGATAGTCCAT
CAAGTATGTTTCCAATATACAATAGACTAATTTCATCTGGTCTCAGGATACTTCTTTTCAGTGGAGATGTAGATGCAGTAGTTTCAGTAACTTCA
ACTCGTTATAGCATTAGTGCAATGAACCTTACAGTCATC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378510] | SGN-U566079 | Tomato 200607 | Build 2 | 28 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1353 [Download][View] | Facility Assigned ID: TUS20L5.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.964 | Expected Error Rate: 0.0067 | Quality Trim Threshold: 14.5 |
Working
