EST details — SGN-C174981

Search information 
Request: 174981Match: SGN-C174981
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C174981Clone name: TUS-20-C11
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174981 is on microarray TOM1 spot ID 1-1-6.3.13.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C23818 [cLED-6-G8] Trace: SGN-T50138 EST: SGN-E233152 Direction: 5' Facility: TIGR
Clone: SGN-C174981 [TUS-20-C11] Trace: SGN-T189685 EST: SGN-E376930 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E376931Length: 595 bp (916 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E376931 [] (trimmed) CAGAACACACACATATTATTTGTTGATTTTATTCGATATTCGTATTAAATTTTAATTGGTTTCTCTATTTAAAAGTATTTCTATATTTGATCTTT
TTTATTTGATACTTAATATTCATATTAAATTTCAATTGATTTTCCTATTTAAAAATATTTTCATATTTGGTCTTTTTTATTTGATATCCGATATT
CATCCTGAATTTCAAATTAATTTCTCTATTTAAAAATATTTTCATACGAGCTTAGTATCATGAATAGTTATATTCCCGTTACTGATTCGAAACAA
GAAAACGAAATTTCTGATTATTACTACGATTCATCATCTTCTTCTTCAACTGGATGTGGATTGTGTAGTTGTTTAAATTTTTCATGTTTCAATTG
GGGCAAAGGCCATGAAGTTCACAGCAGATCTCTGCTACAAGATCATGAAAAACCAGAGCACAGAGAGTCATGGCTGGTGATATTGAAGAATTTAT
TAAGAAAAATGAATAGTAATTCGAAGAAATCGAGACCTCAATTTCAGTATGATGCTCAGAGTTATGCTCTAAATTTTGATGATGGAGCTCGTGAG
GAAGAAGATGGGCTTTTCAGTAATT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E376931] SGN-U572585 Tomato 200607 Build 2 19 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189686 [Download][View] Facility Assigned ID: FA0AAD8AB06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.919 Expected Error Rate: 0.0047 Quality Trim Threshold: 14.5