EST details — SGN-C174710

Search information 
Request: 174710Match: SGN-C174710
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C174710Clone name: TUS-19-H4
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174710 is on microarray TOM1 spot ID 1-1-5.4.15.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C23454 [cLED-5-H10] Trace: SGN-T49896 EST: SGN-E231280 Direction: 5' Facility: TIGR
Clone: SGN-C174710 [TUS-19-H4] Trace: SGN-T189560 EST: SGN-E377206 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E377207Length: 688 bp (931 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E377207 [] (trimmed) TCACAAGTAGTAGTTGGTTACCACTAGTTCTTATCATTTTCCCAAAATAAAATTGAAATTTCAAGATTCCAAATATTTCAAGAACATTAGACATG
GGATTATATGAATCATGTTGTGTTATAGTCCTATATTTTATGTTCTTACTTTTGAATCCTCAATTTTCATGTTCCATGTCATGTACAACACAAAA
GTTCACCAGCAACAAATTGTATGAACATTGCAATGACTTGCCACATTTGAATTGTTACCTTCATTGGACTTACAATCCAAAAATTTCTTCTTTAA
ATTTAGCATTTGCAGCTACTCCTACTAAGCCTAATGGATGGATTTCATGGGGAATCAATCCAAATGGGACGGGAATGATTGGTACACAATCGTTG
ATCGCGTTTAAAAATCTCAACGATACTATAGTTGTGAAAACCTTCAAGTTGAACTCGTATAAGTCTATCGTGGAAGGGGAACTTGAGTATCGCGT
TTCGAATATGCAAGCAATGTATAGTAATGAGCTGATGGTAATTTTTGCTAGTGTTGAATTACCTAAAGGAATGAAAGAGTTGAATCAAGTATGGC
AAGTTGGAAGTTTAGTGTTAAATGGGACATTTCCAGGAATTCATGATTTTCAAATTGAAAATTTGAATTCAAAAGGAAAACTTGATTTGATGAAA
GGAAAAAATGTTAATAATGGTCT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377207] SGN-U571166 Tomato 200607 Build 2 8 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189561 [Download][View] Facility Assigned ID: FA0AAD7DD02RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.936 Expected Error Rate: 0.0054 Quality Trim Threshold: 14.5