EST details — SGN-C174614

Search information 
Request: 174614Match: SGN-C174614
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C174614Clone name: TUS-19-D4
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174614 is on microarray TOM1 spot ID 1-1-5.4.15.4 [Order] [Tomato Microarray Database]
See unigene SGN-U579445 for alternative clones/ESTs which are mapped
Additional sequencing 
Clone: SGN-C23301 [cLED-5-A21] Trace: SGN-T49557 EST: SGN-E230941 Direction: 5' Facility: TIGR
Clone: SGN-C174614 [TUS-19-D4] Trace: SGN-T189541 EST: SGN-E377187 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E377188Length: 721 bp (913 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E377188 [] (trimmed) GTTAAACATGGCTTCTTCTTCTAAATTAGTACTAGTAATGTGCTTTATGATTAGTGCTTTTGGCATTGCAATTGGGGCCAAGTTTGATCAAGAAT
TCGACATTACATGGGGTGATGGCAGAGCAAAAATACTTAACAATGGCGACCTCCTTACTCTCTCACTTGACAAAATCTCAGGCTCTGGTTTTCAA
TCCAAGAATGAATATCTGTTTGGTAAAATTGACATGCAGCTCAAACTTGTCCCAGGAAATTCTGCTGGCACTGTCACTGCTTACTATTTGTCATC
ACAAGGACCAACACATGATGAGATAGATTTTGAATTCTTGGGAAATTTAAGTGGTGATCCTTATACTCTCCATACTAATGTATTTAGTCAAGGCA
AAGGAAACAGAGAACAACAATTTCATCTCTGGTTTGACCCTACTGCTGATTTCCACACGTATTCCATCACTTGGAATCCGCAACGCATCATATTT
TATGTGGACGGAACGCCAATTAGAGAATACAAGAATAGTGAATCGATTGGAGTTTCATATCCAAAGAACCAACCCATGAGGATATATTCGAGTCT
TTGGAATGCTGATGATTGGGCTACAAGAGGAGGCCTTGTTAAGACTGATTGGAGCCAAGCACCCTTTAGTGCTTTTTACAGAAACTTCAGCGCTA
ATGCTTGCATTCCCACTTCTTCATCTTCTTTGCAGTTCAATTCTGCAGCTTCAACT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377188] SGN-U579445 Tomato 200607 Build 2 169 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189542 [Download][View] Facility Assigned ID: FA0AAD7DB02RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.970 Expected Error Rate: 0.0052 Quality Trim Threshold: 14.5