EST details — SGN-C173862

Search information 
Request: 173862Match: SGN-C173862
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C173862Clone name: TUS-17-D20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173862 is on microarray TOM1 spot ID 1-1-5.4.17.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C5735 [cLEC-32-N21] Trace: SGN-T29876 EST: SGN-E207663 Direction: 5' Facility: TIGR
Clone: SGN-C173862 [TUS-17-D20] Trace: SGN-T199826 EST: SGN-E398500 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E395744Length: 655 bp (857 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E395744 [] (trimmed) AGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAAT
CAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCT
TCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGT
ATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTA
GGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAA
ATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTAC
ACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCCAACAGTGACATGATAAGGGTTGTTTGCTTCT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395744] SGN-U575843 Tomato 200607 Build 2 3 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197070 [Download][View] Facility Assigned ID: FA0AAD5DB10RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.965 Expected Error Rate: 0.0023 Quality Trim Threshold: 14.5