EST details — SGN-C173480

Search information 
Request: 173480Match: SGN-C173480
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C173480Clone name: TUS-16-D22
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173480 is on microarray TOM1 spot ID 1-1-3.4.18.15 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C2671 [cLEC-16-M10] Trace: SGN-T27032 EST: SGN-E205143 Direction: 5' Facility: TIGR
Clone: SGN-C173480 [TUS-16-D22] Trace: SGN-T196903 EST: SGN-E395577 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E395578Length: 657 bp (823 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E395578 [] (trimmed) CATCCCAGTTTGCCAGCTTTCTGTCCAGACAAAGAAGGATGGAACTCATCATTTTAACATTGGGAAAGCATTGGCCCCTCTCAAGGAAGAGGGTG
TCCTCATAGTTGGTTCTGGATCTGCAACTCACAACTTGAGGGCTTTGCGCGACACTGCTGGCGTCGCTTCTTGGGCTATGGATTTTGACAATTGG
CTTAAGGAGTCCCTTGTTAATGGAAGGTATGAAGATGTCAACAACTATATGACAAAAGCACCTTGTGCCAAAATTGCACACCCATGGCCTGATCA
CCTGTATCCATTACATGTAGCAATGGGTGCAGCAGGTGAAAATGCCAAAGCTGAACTTATTCATCACAGCTGGAGCAATCATGCTCTTTCTTACG
CCTCCTACAAGTTTGAGTCACAGCTAAAGTAGCCTTTGCTGACGGAAGCATTTAATGGCTTCAATGTATATTTCTTTTGAAAGGTCTTTGGGAAA
GAGTCACTATGTTGTTGGAGGTACACTATACCTCCACATATCCCACTTTAGTAGAATTTCACTGTTGTATAGTATATTTCTGCCGTTTTAATTTA
TGCAAAGCTGAGAGGAGCAAATGTTGCCAAAAAAACAATTTATTTTTTCAAAAAAACAAGGGACCATGCTAATCAAGCAGGACTCTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395578] SGN-U576049 Tomato 200607 Build 2 10 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196904 [Download][View] Facility Assigned ID: FA0AAD4DB11RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.975 Expected Error Rate: 0.0013 Quality Trim Threshold: 14.5