EST details — SGN-C172911

Search information 
Request: 172911Match: SGN-C172911
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C172911Clone name: TUS-14-M5
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172911 is on microarray TOM1 spot ID 1-1-4.1.20.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C14271 [cLEC-7-G14] Trace: SGN-T25424 EST: SGN-E202142 Direction: 5' Facility: TIGR
Clone: SGN-C172911 [TUS-14-M5] Trace: SGN-T195141 EST: SGN-E393815 Direction: 3' Facility: INRA
Clone: SGN-C172911 [TUS-14-M5] Trace: SGN-T195142 EST: SGN-E393816 Direction: 5' Facility: INRA
Clone: SGN-C172911 [TUS-14-M5] Trace: SGN-T195321 EST: SGN-E393995 Direction: 3' Facility: INRA
Clone: SGN-C172911 [TUS-14-M5] Trace: SGN-T195321 EST: SGN-E398974 Direction: 3' Facility: INRA
Clone: SGN-C172911 [TUS-14-M5] Trace: SGN-T195322 EST: SGN-E393996 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E398975Length: 555 bp (869 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E398975 [] (trimmed) ATCTTCTCTATCGACCATGTTGAGCCAACCTCACTGTGCTGTGCGCATCAAATTCCCTAAACAATATTCGGTCAGATTCCTTTCTTCGAAGCTTC
TTGAAGTTCAATCAACCTCCTCCCGCCGCACCTCAGTTTCTCTTGGGAGGAGTTCTACATTCTCTATCAAGATATCCAGGAATTTCTCGCAGTGT
CACTCCCGCACTTCCTTAACCAGCAAGAACCAAATTCCAACCCTCCGTGACTTCATACCCAAAGCTACTCAGACTGTTTCTTCTTCCGATGTTCA
GCAGGAGTCTGTGATGATATCTGACGTTATGCCTAGAGGACGCATCTATCATGAAACTTATGGATGTCAAATGAATGTCAATGATATGGAGATTG
TTTTATCCATCATGAAAAATGCTGGATACACTGAAAGTGTGGAAGTCCCAGAAAATGCTGAGATAATATTTATAAATACTTGTGCTATAAGGGAC
AATGCAGAACTTAAGGTTTGGCAGAGGCTCAATTATTTTTGGTTGCTTACGAGGCAATGGAAGAGGAATGTTGCCTCTGG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398975] SGN-U563728 Tomato 200607 Build 2 26 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195142 [Download][View] Facility Assigned ID: FA0AAD2AG03RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.978 Expected Error Rate: 0.0047 Quality Trim Threshold: 14.5