EST details — SGN-C172898

Search information 
Request: 172898Match: SGN-C172898
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C172898Clone name: TUS-14-L16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172898 is on microarray TOM1 spot ID 1-1-1.4.20.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C14246 [cLEC-7-E9] Trace: SGN-T25376 EST: SGN-E202094 Direction: 5' Facility: TIGR
Clone: SGN-C172898 [TUS-14-L16] Trace: SGN-T188112 EST: SGN-E374804 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E374805Length: 645 bp (906 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E374805 [] (trimmed) GTTTGTTCTGTGGCACAGTTACTTGGTGATCTTGTCACTTACCGGGCATCTGGAACAGGTCATTTAGAGCTCTTGGCAGGACTAGCTTTATTGCA
GAATTCTTCTTCCTTCTCTAAATCCTATGAAGAGTCAAGGGTTGTACCCATTGAAAGGATGCGCAAGGCTGCTTTCTATCATCCATTTGCTGAAG
CAGCCTACACGGGTCTATTACTTGATATAGGAAGAAATCCTGTACTTTTTTCTTGTTCATGGCTCTATAGGCAAGGCATTCTTGCTCCCTGGCTT
TGGAACAGGCGACCTTTACTAGAAGGTGACAACTGGTGGCGAGGTCATGCAGCAGCCTTCTTGAAACATGTTCATTTGTCAGCACATATGCTCAG
AAAAGGGCGTGTTAATCAAGGGAAGTGTAAAGCAGCATACTTTATTGTGGTTTTGCATAATGTGAAATCTGTTGTAATTGCTGTGAGGGGAACTG
AGACCCCCGAAGACCTCATAACTGATGGTTTAGGCAGGGAATGCTGCCTTACTGAAGAAGAATTAGATAGCCTGCTAAATGGCAATCATTGTGAT
CCATACCTTCATCAAAGAGTGGTTTCGTCCACTCCACACTATGCACACTTCGGAGTAGTTGAGGCCGCACGTGAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E374805] SGN-U565862 Tomato 200607 Build 2 2 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T188113 [Download][View] Facility Assigned ID: FA0AAD2DF08RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.982 Expected Error Rate: 0.0064 Quality Trim Threshold: 14.5