EST details — SGN-C172764
| Search information |
| Request: 172764 | Match: SGN-C172764 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C172764 | Clone name: TUS-14-G2 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172764 is on microarray TOM1 spot ID 1-1-7.3.20.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10910 [cLEC-6-J7] | Trace: SGN-T24179 | EST: SGN-E202518 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172764 [TUS-14-G2] | Trace: SGN-T195229 | EST: SGN-E393903 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172764 [TUS-14-G2] | Trace: SGN-T195671 | EST: SGN-E394345 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172764 [TUS-14-G2] | Trace: SGN-T195671 | EST: SGN-E399051 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172764 [TUS-14-G2] | Trace: SGN-T199599 | EST: SGN-E398273 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172764 [TUS-14-G2] | Trace: SGN-T199599 | EST: SGN-E399052 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394050 | Length: 662 bp (827 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394050 [] (trimmed)
TAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGGATGTG
ATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTA
ATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCA
GCTGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAA
CATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGCGGCCCATTCTGTTGGTTTT
TCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACA
AGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTT
ATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTA
ATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCA
GCTGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAA
CATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGCGGCCCATTCTGTTGGTTTT
TCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACA
AGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394050] | SGN-U580841 | Tomato 200607 | Build 2 | 102 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195376 [Download][View] | Facility Assigned ID: FA0AAD2BD01RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.971 | Expected Error Rate: 0.0104 | Quality Trim Threshold: 14.5 |
Working
