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Tomato locus Fenthion sensitivity
Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
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Fenthion sensitivity is a TGRC gene
Fenthion sensitivity is on PhyloGenes
TomDelDB genotype frequencies in tomato populations. chromosome SL2.50ch05, position: 6387700
Please cite Razifard et al.
TomDelDB genotype frequencies in tomato populations. chromosome SL2.50ch05, position: 6387787
Please cite Razifard et al.
TomDelDB genotype frequencies in tomato populations. chromosome SL2.50ch05, position: 6387893
Please cite Razifard et al.
TomDelDB genotype frequencies in tomato populations. chromosome SL2.50ch05, position: 6387898
Please cite Razifard et al.
Registry name: | None | [Associate registry name] |
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![]() ![]() | unprocessed genomic sequence region underlying this gene |
>Solyc05g013290.1 SL2.50ch05:6388380..6387418 (sequence from reverse strand)
ATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAATGATGCTTCTAACTTGAGTTATGGCATTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACGTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGCTCAGATCTACCCACTATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTTCACTACCTTCATACTAACGGAGTTATACATCGTGATGTCAAGTGTACAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGATTTTGGAATATCTAAGACAATGCCCGAGCTTGATCTAACCCATCTTAGCACAGTAGTGAGAGGAAATATAGGCTACATTGCCCCTGAATATGCTTTGTGGGGACAGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTCGAAGTTCTTTGTGCTAGGCCTGCCCTATATCTTTCAGAGATGATGAGTTCTGATGATGAGACGCAGAAGATGGGACAGTTGGAACAAATTGTAGATCCCGCTATTGCGGCCAAAATAAGACCAGAGTCCCTCAGGATGTTTGGAGAAACAGCGATGAAATGCTTAGCTCCGTCTAGTAAAAATAGGCCATCAATGGGTGATGTGCTGTGGAAACTGGAGTATGCACTTTGTCTCCAAGAGCCTACCATTCAAGATGATCCTGAATGA
ATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAATGATGCTTCTAACTTGAGTTATGGCATTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACGTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGCTCAGATCTACCCACTATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTTCACTACCTTCATACTAACGGAGTTATACATCGTGATGTCAAGTGTACAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGATTTTGGAATATCTAAGACAATGCCCGAGCTTGATCTAACCCATCTTAGCACAGTAGTGAGAGGAAATATAGGCTACATTGCCCCTGAATATGCTTTGTGGGGACAGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTCGAAGTTCTTTGTGCTAGGCCTGCCCTATATCTTTCAGAGATGATGAGTTCTGATGATGAGACGCAGAAGATGGGACAGTTGGAACAAATTGTAGATCCCGCTATTGCGGCCAAAATAAGACCAGAGTCCCTCAGGATGTTTGGAGAAACAGCGATGAAATGCTTAGCTCCGTCTAGTAAAAATAGGCCATCAATGGGTGATGTGCTGTGGAAACTGGAGTATGCACTTTGTCTCCAAGAGCCTACCATTCAAGATGATCCTGAATGA
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![]() ![]() | terms associated with this mRNA |
![]() ![]() | spliced cDNA sequence, including UTRs |
>Solyc05g013290.1.1 Pto-like serine/threonine kinase (AHRD V1 **** Q6W0C8_CAPCH); contains Interpro domain(s) IPR017442 Serine/threonine protein kinase-related
ATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAATGATGCTTCTAACTTGAGTTATGGCATTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACGTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGCTCAGATCTACCCACTATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTTCACTACCTTCATACTAACGGAGTTATACATCGTGATGTCAAGTGTACAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGATTTTGGAATATCTAAGACAATGCCCGAGCTTGATCTAACCCATCTTAGCACAGTAGTGAGAGGAAATATAGGCTACATTGCCCCTGAATATGCTTTGTGGGGACAGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTCGAAGTTCTTTGTGCTAGGCCTGCCCTATATCTTTCAGAGATGATGAGTTCTGATGATGAGACGCAGAAGATGGGACAGTTGGAACAAATTGTAGATCCCGCTATTGCGGCCAAAATAAGACCAGAGTCCCTCAGGATGTTTGGAGAAACAGCGATGAAATGCTTAGCTCCGTCTAGTAAAAATAGGCCATCAATGGGTGATGTGCTGTGGAAACTGGAGTATGCACTTTGTCTCCAAGAGCCTACCATTCAAGATGATCCTGAATGA
ATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAATGATGCTTCTAACTTGAGTTATGGCATTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACGTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGCTCAGATCTACCCACTATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTTCACTACCTTCATACTAACGGAGTTATACATCGTGATGTCAAGTGTACAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGATTTTGGAATATCTAAGACAATGCCCGAGCTTGATCTAACCCATCTTAGCACAGTAGTGAGAGGAAATATAGGCTACATTGCCCCTGAATATGCTTTGTGGGGACAGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTCGAAGTTCTTTGTGCTAGGCCTGCCCTATATCTTTCAGAGATGATGAGTTCTGATGATGAGACGCAGAAGATGGGACAGTTGGAACAAATTGTAGATCCCGCTATTGCGGCCAAAATAAGACCAGAGTCCCTCAGGATGTTTGGAGAAACAGCGATGAAATGCTTAGCTCCGTCTAGTAAAAATAGGCCATCAATGGGTGATGTGCTGTGGAAACTGGAGTATGCACTTTGTCTCCAAGAGCCTACCATTCAAGATGATCCTGAATGA
![]() ![]() | translated polypeptide sequence |
>Solyc05g013290.1.1 Pto-like serine/threonine kinase (AHRD V1 **** Q6W0C8_CAPCH); contains Interpro domain(s) IPR017442 Serine/threonine protein kinase-related
MGSKYSKATNSINDASNLSYGIPFENYRVPFVDLEEATNNFDDKFFIGEGGFGKVYRGVLRDGTKVALKKHKRESSQGIEEFETEIEILSFCSHPHLVSLIGFCDERNEMILIYDYMENGNLKSHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTNGVIHRDVKCTNILLDENFVPKITDFGISKTMPELDLTHLSTVVRGNIGYIAPEYALWGQLTEKSDVYSFGVVLFEVLCARPALYLSEMMSSDDETQKMGQLEQIVDPAIAAKIRPESLRMFGETAMKCLAPSSKNRPSMGDVLWKLEYALCLQEPTIQDDPE*
MGSKYSKATNSINDASNLSYGIPFENYRVPFVDLEEATNNFDDKFFIGEGGFGKVYRGVLRDGTKVALKKHKRESSQGIEEFETEIEILSFCSHPHLVSLIGFCDERNEMILIYDYMENGNLKSHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTNGVIHRDVKCTNILLDENFVPKITDFGISKTMPELDLTHLSTVVRGNIGYIAPEYALWGQLTEKSDVYSFGVVLFEVLCARPALYLSEMMSSDDETQKMGQLEQIVDPAIAAKIRPESLRMFGETAMKCLAPSSKNRPSMGDVLWKLEYALCLQEPTIQDDPE*
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![]() ![]() | [Associate new unigene] |
Unigene ID:
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![]() ![]() | [Associate new genbank sequence] |
U13923 Lycopersicon pimpinellifolium serine/threonine protein kinase (Fen) mRNA, complete cds.
Other genome matches | None |
![]() ![]() | [Associate publication] [Matching publications] |
The disease-resistance gene Pto and the fenthion-sensitivity gene fen encode closely related functional protein kinases.
Proceedings of the National Academy of Sciences of the United States of America (1995)
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Resistance to bacterial speck in tomato is governed by a gene-for-gene interaction in which a single resistance locus (Pto) in the plant responds to the expression of a specific avirulence gene (avrPto) in the pathogen. Disease susceptibility results if either Pto or avrPto are lacking from the corresponding organisms. Leaves of tomato cultivars that contain the Pto locus also exhibit a hypersensitive-like response upon exposure to an organophosphorous insecticide, fenthion. Recently, the Pto gene was isolated by a map-based cloning approach and was shown to be a member of a clustered multigene family with similarity to various protein-serine/threonine kinases. Another member of this family, termed Fen, was found to confer sensitivity to fenthion. The Pto protein shares 80% identity (87% similarity) with Fen. Here, Pto and Fen are shown to be functional protein kinases that probably participate in the same signal transduction pathway.
Loh, YT. Martin, GB.
Proceedings of the National Academy of Sciences of the United States of America.
1995.
92(10).
4181-4.
A member of the tomato Pto gene family confers sensitivity to fenthion resulting in rapid cell death.
The Plant cell (1994)
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Leaves of tomato cultivars that contain the Pto bacterial resistance locus develop small necrotic lesions within 24 hr after exposure to fenthion, an organophosphorous insecticide. Recently, the Pto gene was isolated and shown to be a putative serine/threonine protein kinase. Pto is one member of a multigene family that is clustered within a 400-kb region on chromosome 5. Here, we report that another member of this gene family, termed Fen, is responsible for the sensitivity to fenthion. Fen was isolated by map-based cloning using closely linked DNA markers to identify a yeast artificial chromosome clone that spanned the Pto region. After transformation with the Fen gene under control of the cauliflower mosaic virus (CaMV) 35S promoter, tomato plants that are normally insensitive to fenthion rapidly developed extensive necrotic lesions upon exposure to fenthion. Two related insecticides, fensulfothion and fenitrothion, also elicited necrotic lesions specifically on Fen-transformed plants. Transgenic tomato plants harboring integrated copies of the Pto gene under control of the CaMV 35S promoter displayed sensitivity to fenthion but to a lesser extent than did wild-type fenthion-sensitive plants. The Fen protein shares 80% identity (87% similarity) with Pto but does not confer resistance to Pseudomonas syringae pv tomato. These results suggest that Pto and Fen participate in the same signal transduction pathway.
Martin, GB. Frary, A. Wu, T. Brommonschenkel, S. Chunwongse, J. Earle, ED. Tanksley, SD.
The Plant cell.
1994.
6(11).
1543-52.
Tomato mutants altered in bacterial disease resistance provide evidence for a new locus controlling pathogen recognition.
The Plant cell (1994)
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We have employed a genetic approach to study the resistance of tomato to the phytopathogenic bacterium Pseudomonas syringae pv tomato. Resistance to P. s. tomato depends upon expression of the Pto locus in tomato, which encodes a protein with similarity to serine/threonine protein kinases and recognizes pathogen strains expressing the avirulence gene avrPto. Eleven tomato mutants were isolated with altered resistance to P. s. tomato strains expressing avrPto. We identified mutations both in the Pto resistance locus and in a new locus designated Prf (for Pseudomonas resistance and fenthion sensitivity). The genetic approach allowed us to dissect the roles of these loci in signal transduction in response to pathogen attack. Lines carrying mutations in the Pto locus vary 200-fold in the degree to which they are susceptible to P. s. tomato strains expressing avrPto. The pto mutants retain sensitivity to the organophosphate insecticide fenthion; this trait segregates with Pto in genetic crosses. This result suggested that contrary to previous hypotheses, the Pto locus controls pathogen recognition but not fenthion sensitivity. Interestingly, mutations in the prf locus result in both complete susceptibility to P. s. tomato and insensitivity to fenthion, suggesting that Prf plays a role in tomato signaling in response to both pathogen elicitors and fenthion. Because pto and prf mutations do not alter recognition of Xanthomonas campestris strains expressing avrBsP, an avirulence gene recognized by all tested tomato cultivars, Prf does not play a general role in disease resistance but possibly functions specifically in resistance against P. s. tomato. Genetic analysis of F2 populations from crosses of pto and prf homozygotes indicated that the Pto and Prf loci are tightly linked.
Salmeron, JM. Barker, SJ. Carland, FM. Mehta, AY. Staskawicz, BJ.
The Plant cell.
1994.
6(4).
511-20.
Tomato Prf is a member of the leucine-rich repeat class of plant disease resistance genes and lies embedded within the Pto kinase gene cluster.
Cell (1996)
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In tomato, resistance to Pseudomonas syringae pv. tomato (Pst) strains expressing the avirulence gene avrPto requires the presence of at least two host genes, designated Pto and Prf. Here we report that Prf encodes a protein with leucine-zipper, nucleotide-binding, and leucine-rich repeat motifs, as are found in a number of resistance gene products from other plants. prf mutant alleles (4) were found to carry alterations within the Prf coding sequence. A genomic fragment containing Prf complemented a prf mutant tomato line both for resistance to Pst strains expressing avrPto and for sensitivity to the insecticide Fenthion. Prf resides in the middle of the Pto gene cluster, 24 kb from the Pto gene and 500 bp from the Fen gene.
Salmeron, JM. Oldroyd, GE. Rommens, CM. Scofield, SR. Kim, HS. Lavelle, DT. Dahlbeck, D. Staskawicz, BJ.
Cell.
1996.
86(1).
123-33.
Alleles of Pto and Fen occur in bacterial speck-susceptible and fenthion-insensitive tomato cultivars and encode active protein kinases.
The Plant cell (1997)
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The Pto gene was derived originally from the wild tomato species Lycopersicon pimpinellifolium and confers resistance to Pseudomonas syringae pv tomato strains expressing the avirulence gene avrPto. The Fen gene is also derived from L. pimpinellifolium and confers sensitivity to the insecticide fenthion. We have now isolated and characterized the alleles of Pto and Fen from cultivated tomato, L. esculentum, and designated them pto and fen. High conservation of genome organization between the two tomato species allowed us to identify the pto and fen alleles from among the cluster of closely related Pto gene family members. The pto and fen alleles are transcribed and have uninterrupted open reading frames that code for predicted proteins that are 87 and 98% identical to the Pto and Fen protein kinases, respectively. In vitro autophosphorylation assays revealed that both the pto and fen alleles encode active kinases. In addition, the pto kinase phosphorylates a previously characterized substrate of Pto, the Pto-interacting Pti1 serine/threonine kinase. However, the pto kinase shows impaired interaction with Pti1 and with several previously isolated Pto-interacting proteins in the yeast two-hybrid system. The observation that pto and fen are active kinases and yet do not confer bacterial speck resistance or fenthion sensitivity suggests that the amino acid substitutions distinguishing them from Pto and Fen may interfere with recognition of the corresponding signal molecule or with protein-protein interactions involved in the Pto- and Fen-mediated signal transduction pathways.
Jia, Y. Loh, YT. Zhou, J. Martin, GB.
The Plant cell.
1997.
9(1).
61-73.
A bacterial E3 ubiquitin ligase targets a host protein kinase to disrupt plant immunity.
Nature (2007)
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Many bacterial pathogens of plants and animals use a type III secretion system to deliver diverse virulence-associated 'effector' proteins into the host cell. The mechanisms by which these effectors act are mostly unknown; however, they often promote disease by suppressing host immunity. One type III effector, AvrPtoB, expressed by the plant pathogen Pseudomonas syringae pv. tomato, has a carboxy-terminal domain that is an E3 ubiquitin ligase. Deletion of this domain allows an amino-terminal region of AvrPtoB (AvrPtoB(1-387)) to be detected by certain tomato varieties leading to immunity-associated programmed cell death. Here we show that a host kinase, Fen, physically interacts with AvrPtoB(1-387 )and is responsible for activating the plant immune response. The AvrPtoB E3 ligase specifically ubiquitinates Fen and promotes its degradation in a proteasome-dependent manner. This degradation leads to disease susceptibility in Fen-expressing tomato lines. Various wild species of tomato were found to exhibit immunity in response to AvrPtoB(1-387 )and not to full-length AvrPtoB. Thus, by acquiring an E3 ligase domain, AvrPtoB has thwarted a highly conserved host resistance mechanism.
Rosebrock, TR. Zeng, L. Brady, JJ. Abramovitch, RB. Xiao, F. Martin, GB.
Nature.
2007.
448(7151).
370-4.
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