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Clone Read LE_HBa0141D19_SP6_99636

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0141D19_SP6_99636
Primer
SP6
ID from Seq. Facility
LE_HBa_141_D19-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 627 raw
Sequence
>LE_HBa0141D19_SP6_99636 (raw untrimmed)
TACTATCAGTATGCCAGACACGGACCCCCTTCAAGAAGGGAGCGGGCGTGCGGGGTGGACTCGCTTGTGCCGCTCTACTGGAAGTTTTCACCAAACCAGC
TGAGAGAGGAAAGATTTGGCGATACGTAATAAAAAATGAAGAGCTAACTAGAGCAATGGGACCTTGTAGTTTTACACTCACACCGATGACCTACCCGACG
AACCACCGCGGAGAGGGACAACGGTATCTTCAATTGGATTCTGAACCAACATCTCAACGACGTTGTACTATGGTACTGTGTTGGAGTGATCTTTATTATC
AATGTCCTACGGGCGGTGCGAGGATTCATATCTGTCCACACATATCGAAGCGCCGAGGGGATGAGGAGCTGAAAGGTGTCCTGTCTGAAGCACAGAGATA
GGACATTCATTAGTATAACTTGAACGGCCCCACACTAACGCCTCTATCACACCACACAGAACACTCACAAAAACGTAAAACATACACAACTCTGCTCATA
TTCCGGACACACACTGCCTTTACTATGCTTATATTCTACCCCTCTCATATATTTACAACTGATACAATAGAATTGGCCAGTAACGCAAACACCGAATAAC
GACGGGTCAAAGCTCTCCTCTCAAACG
>LE_HBa0141D19_SP6_99636 (trimmed for quality and cloning vector)
T

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0141D19
Clone
Clone name
hba-141d19
LE_HBa0141D19
P141D19
Clone type
BAC
Contamination
none
Estimated length
117,794
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found