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Clone Read LE_HBa0049G24_SP6_9934

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0049G24_SP6_9934
Primer
SP6
ID from Seq. Facility
LE_HBa_049_G24-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 840 raw
Sequence
>LE_HBa0049G24_SP6_9934 (raw untrimmed)
ATTTTCGAAGTTCCCCATAAAATCGTAATAGAGGATGTAATGTATTGATGGGGTACCTTACCCAGCAGTATACTTCTTAGTACAGTGGCATGAATATAAA
TATGATATTGGAAGGGCGTAACAATAAAGTGCACATTGTCTTACAAATGTTGAGAACCGACTTTATGAGGGAGTGGGGAAGGATGATGACCTGTGATAGT
TACCTGCGTGAGGGAGGATAATGATGAGATCCCCCCACCCTTGAACGAGACGATAGCATGATAAATTAAGATACTGGGCGAGCTGGTGCCGAGAAGGCGA
TAAGGAATGCAGAGTTACAAATTATCACCAATGCGAAACCCGTTGGACGGACCGTCAGCATTTTTTTTCGGGATAATGTGTTAGGGGATGAAATTTTAGA
GGGAGGGGGAAAAGTAGTTTTTTTTTTTCTCCC
CCCCCCCCGGCATATGCGTCTTTTTTTAAAAAGGGGGAGGGAGGTATCACATTTCACTAACAAGAAG
AAATAATTATGTCAGAAATTGTCCTTTTTATTTAAGTAGAATTATAAGGACAAGGTGTCTAGTAAATTTAGTCAAAATGGCTGCTCTTGATGCAAAGATC
GGATCCGCAGATAATATGGAATGTCCTTGCAAGATGAGGACACATCCATTAATGTGCAGGTGAGGAGATGATCAAGTTTCACCCACTCACTGATCGAGAA
GAAATAACCTATCCTCGCATAACTTAAAATCTTTATACAAATTAGCTTCAGTACCGAGAAGGGTTTTTATCCATCCGGAGACGTCACGGTCAACAAACAG
ATTCGACAAGCTAACGTCCTTTTTTAGCACCTGCTGTTTC
>LE_HBa0049G24_SP6_9934 (trimmed for quality and cloning vector)
CC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.823994
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0049G24
Clone
Clone name
hba-49g24
LE_HBa0049G24
P049G24
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found