Clone Read LE_HBa0109F22_SP6_96666

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0109F22_SP6_96666
Primer
SP6
ID from Seq. Facility
LE_HBa_109_F22-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
361 trimmed for vector and quality, 754 raw
Sequence
>LE_HBa0109F22_SP6_96666 (raw untrimmed)
CCCCCCCTCTGTCCGCATCATCGTCCAAAAGTTCAATATCGTCATTCATAATTCACCCCACTGTTTATACATTATAAATATAAATTCCACTGTCCTGCCA
TTCATAAAGTGTTCTATATGTTATTCATACAATGTTCATACAATATTCATACAATATTCATACAATGTTTATATATATATCATTGGTTTCTGTTACATGT
ATCAAAATCAATATGGCATTCATAATTCATACAATGTTTATACATTAAAAATATACATTGAACTATACTGTCAATCATAAACTATTATAATACATGCATT
TATTATTAAGTTAGTTCATATAAAGTTGCAATCTATTTCAAACAAAATTCATACAAAAATAATGGTAACATTGATACATTATATAAGCAAAATTTTAAAT
TCATAACTTGTTATATTATAAAAAAACATTAAAAATAACATAAATTGTTATAATGTTAAAAAAATTTAAAATATCAGAAATTAATTATTTATCAAACAAA
ATATTAAAATAATAGAAATTGTTATTTTTGTCAAATTTATCCAAATATTTCTTTTAGTAATTGATAACTTGGTTTTTCAATTTTTTTTTATTTATTTATT
TTCTTGTTAATAGAATTTGGAAAATTAATCTTTAAACACACACCATTTTCATTATACTTTTTTTTTTATCTTATAGCTTTTTTTCTGTCTATGACATTAC
TGTTTTTTTTATATTTGAATCACTATTATGTGTTCTCCTTCGTTCATGATTTTT
>LE_HBa0109F22_SP6_96666 (trimmed for quality and cloning vector)
TTATACATTATAAATATAAATTCCACTGTCCTGCCATTCATAAAGTGTTCTATATGTTATTCATACAATGTTCATACAATATTCATACAATATTCATACA
ATGTTTATATATATATCATTGGTTTCTGTTACATGTATCAAAATCAATATGGCATTCATAATTCATACAATGTTTATACATTAAAAATATACATTGAACT
ATACTGTCAATCATAAACTATTATAATACATGCATTTATTATTAAGTTAGTTCATATAAAGTTGCAATCTATTTCAAACAAAATTCATACAAAAATAATG
GTAACATTGATACATTATATAAGCAAAATTTTAAATTCATAACTTGTTATATTATAAAAAA

This is probably not a useful sequence.

Problems:
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.822421
Expected error %
0.330725
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0109F22
Clone
Clone name
hba-109f22
LE_HBa0109F22
P109F22
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found