Clone Read LE_HBa0108N20_SP6_96278

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0108N20_SP6_96278
Primer
SP6
ID from Seq. Facility
LE_HBa_108_N20-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
103 trimmed for vector and quality, 874 raw
Sequence
>LE_HBa0108N20_SP6_96278 (raw untrimmed)
ATTCCGTTTTTTATGGCAGATGCTTATNNNNNTGNATTGANNGTNTNTNNTGTTGGTTNNNTTNNTATATTATATAATTGATCCCCCTACCCATATTCCA
ACATTTTAACTA
TTTGGTAACGAAGACCCTCGACGGACCGTCGTGCCTGTGACGGTCCGTCACACTTGCCGTCTAGGGGAATGAAGAAAGCAGCAGAAGA
ATTGCACCAAGTATGGGGTGACGGAGCCCACCACGGTCCGTCTTGACCACGATGTTCCGTCGCGTGGTCCGTCCACCCAGCCGCGTTTTGACAGATTTCC
AGTAATTTGAATCCTTGTTTAATTAGGCTTTTATTTTTCATCATTAGTTCGAAAAACCTCACTTTGGAGGATAGACTCTGGGAGATTCAACTTCATATTG
TTAGACTTTGTTTTTCTGAGTTTTTGATTGTTGGAGATTCTTACAAGTTAACTCTTGATGATTAATCATGCTAATATTCATACTTTATTCTTCCTCAATA
AAGTAAGTACATGACTTTCTTGTTTAATCTTTTTTGAATAATGGTGTTTATGGATATGAACGAACTAAATCTCTATAACTAGTGGTGGTGGCGAACCATT
GGCCTAACAATGAATATAGACCTTTATGCTAATAAAACGTTTCCTTGAACTCGTGTCCCTTGCCTGGTTTCACTATAGTTCCTTTCGCCTTGTAACACCA
CCTTTCAAAGAATTTATTGAATATATTGACACTCCATACTCTAAATTTATTCTTGATTGGGTACTACTGATAGTTTTGATAAAATGGACTTAGAAAATTG
CTTCCTGCTGTCGTATCTGTCGTTTAGTTCTTATTGCTTACGTATCCTATTGCGAATCGCGTATTGGCTTCCTC
>LE_HBa0108N20_SP6_96278 (trimmed for quality and cloning vector)
TTTGGTAACGAAGACCCTCGACGGACCGTCGTGCCTGTGACGGTCCGTCACACTTGCCGTCTAGGGGAATGAAGAAAGCAGCAGAAGAATTGCACCAAGT
ATG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.935849
Expected error %
0.61762
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0108N20
Clone
Clone name
hba-108n20
LE_HBa0108N20
P108N20
Clone type
BAC
Contamination
none
Estimated length
231,268
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found