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Clone Read LE_HBa0108J06_SP6_96058

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0108J06_SP6_96058
Primer
SP6
ID from Seq. Facility
LE_HBa_108_J06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
389 trimmed for vector and quality, 840 raw
Sequence
>LE_HBa0108J06_SP6_96058 (raw untrimmed)
ATTTCGTTTTTTTTNCCGTATCNCACNNANANTNNATTATNNTNTNNNTNNNTNTNTNTTTNNTATTTNTNNNTTCTNNTCNNNCTTTTATAATATAANT
NNTNTATCCNTNTTNATATTCATTCTTAAAAAATATNNACAATATCCTCCTACTCTTCTTTNTCTTTTTTCTTCTCTTTTCATCTNTCTATNCAAAATAT
NATTACCCCCTNNATTCCATTTCTNNAAACAATCNTTTCNATATACNATTTCCTTTTNNATTACANANNCCACAAAATCTTCAACATTNTACATATCCTN
NTTTCAATCTCAAATNCAACAATCAANNCAAATTAATTCTAAATCTTCCATNTNCANNTAATTTCTATNTACTCNATATCAACTACCTCACACAAAAAAT
TCAACTCTACAATCCATCTAATTNCCTTCCNAAAANNCTTACTNATTTTCAAATNCCTTCTCTTTCTNTCTTCAAATCTNTTTCCTATCNAAACTACACT
TTCTTNACTTATTCNACANNTTTANNTCAATCTCAATTCAATATTATTAATTATATAAACAATTCTACCATCTCCACTTTANCTACTTCTTCAACCAACC
TTCCAAACCAAATTAAAATCTTTTATAATTACAATTTTAAAACCACCTTNTCTATTCCTTTTTCTTAAACCCCTAAAAATAATCCACTTTTTTCAACTAA
CCTTAATAATCAATCTTTTATTAACCCCTAATAAACCCAATTTCCATAAAATTTAAATTAAAAACAAAATTATTTTTTTTAATTAAAAAATCCCAACTAC
CTACAAAAAAATTCCTTTTTCTTTTAATTCCTTTCTAAAA
>LE_HBa0108J06_SP6_96058 (trimmed for quality and cloning vector)
ATATTCATTCTTAAAAAATATNNACAATATCCTCCTACTCTTCTTTNTCTTTTTTCTTCTCTTTTCATCTNTCTATNCAAAATATNATTACCCCCTNNAT
TCCATTTCTNNAAACAATCNTTTCNATATACNATTTCCTTTTNNATTACANANNCCACAAAATCTTCAACATTNTACATATCCTNNTTTCAATCTCAAAT
NCAACAATCAANNCAAATTAATTCTAAATCTTCCATNTNCANNTAATTTCTATNTACTCNATATCAACTACCTCACACAAAAAATTCAACTCTACAATCC
ATCTAATTNCCTTCCNAAAANNCTTACTNATTTTCAAATNCCTTCTCTTTCTNTCTTCAAATCTNTTTCCTATCNAAACTACACTTTCT

This is probably not a useful sequence.

Problems:
  • High predicted error rate
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.924308
Expected error %
19.0645
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0108J06
Clone
Clone name
hba-108j6
LE_HBa0108J06
C01HBa0108J06
P108J06
Clone type
BAC
Contamination
none
Estimated length
113,625
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found