Clone Read LE_HBa0108H19_SP6_95988

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0108H19_SP6_95988
Primer
SP6
ID from Seq. Facility
LE_HBa_108_H19-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 841 raw
Sequence
>LE_HBa0108H19_SP6_95988 (raw untrimmed)
TTCTTCGGGCAGTATTCCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNAN
NNNNNNNNNNNNNNNNNNNCNACNNNNNCTNCNCNCNNNNACNNNNNCACCNNCNCCCCCACCCNCNCCCCCCCCNNAANCCNCNCCCAAAAAAAACCAA
CACCACCCACACATCTACTCCTCTTATCTCACACACCAACTAAAAAACATCCATAAATTTCAATTTCATATACAATCTCCATATTTTATAACTTCTCCTC
CCCTATTACTCATTTTAACAACAATACAATAATAATATCAATTATATTTCCTTCACACTTTACTTTCATCTTTACCACAAATCCCCCCTCTTACATCTTA
AACTACTAACATACCATCTTACCCTAAATTAAAATATAAATCTAACTTACATAAATATTT
TTATATCTCTCTTAAAATCCCCAAAATATCACAAATAAAA
TTTCATCCACCACTCTATTATCATCATATCATTTCATACATTCATATTTATCATTTTTAATCAAAATCATTTTAATAAACCAAAACTTTATCACTTCTTT
CCTTCCCTTCTTTTCATTTCTTTTTTATCCATACCCAATACTCTAATTTATCATTTTTCAAACAAAAAACTATCTATATTTTTCAAAATATCTTCCTTCT
CCCTTTACAATTTCACCTTTTTTTCTTTTTTAAAAAAAAAATTTACTTTCTCTAATTAATTTTAAAATTCACTTTACATTTCCTTACCATCCCCTTTAAA
TACCATTAATTAATTCCAAAATCTCCCAATAAAATTAATTT
>LE_HBa0108H19_SP6_95988 (trimmed for quality and cloning vector)
TTATA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.922641
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0108H19
Clone
Clone name
hba-108h19
LE_HBa0108H19
P108H19
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found