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Clone Read LE_HBa0091F14_SP6_95114

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0091F14_SP6_95114
Primer
SP6
ID from Seq. Facility
LE_HBa_091_F14-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
665 trimmed for vector and quality, 916 raw
Sequence
>LE_HBa0091F14_SP6_95114 (raw untrimmed)
GTTCCGAGAGTTATGAGACATTTCCTTAGGGAGGGCTGGTGTCTTGAGGTATCAAGGAGTTGTGTGTTCCCAATGTCCATGATTTTTGGAACCGAATTCT
TGAGAAAGATTATGGGTCCCGTTTCTCCATTCATCCAGGTTCAACAAAGATGTACCATGACCTTAGGGAAGTGTTTTGGTAGTAATGTTCTAAAAAGGAC
ATAGGAGAATTTGTTGCTAATTGTCCAAATTACGAGCAAGTGAAAGTTTAACATCAATAGCATAGTGGTTTAATTTAGGAAAACTAAATTACTACTTGGA
AGTGGGAAGACATCAATATGGATCTGTAGTAGGTTTGCCTCAGACACAAAAACAATATGACTCCATATGGGTGGTTATGAATAATTTGGCCAAATCCTCT
CAATGTATTCCCATAAAGTCTACTTATTCGGCGGAGGATTATGAAAAGATCTTCAAAGATGATGTTGTGTGTCCCAATAGTATTCTGTTATCTATCATAT
CGGATAAGGGTTCACAATTTTCACATCCGGATTCACCCCCTAAACATAACCTGTGTGGTTGTCCTTTTTAAGAACTAAGACTATTTCCTTAGTCTTATGT
CATTACATTCATGGGTTGAAAATACGGAAAAATTTAAAAAATTTCATTACATCTACTTGGAGGTTTACGTTAACCAATACAATACACATAATATTATCGT
ATCGAGGTTTACACAGACCCTTTGTATAGGAAGGTTACATAGCCCTTCCACTTTTTATAGACATTATTATATAGAAAATACCTAGTCATATAAAGCGTCC
GTCTCCAAACCTACTTTTGCGAGTATACATATTTGAGTTTGAACCTTACATCACCCAATCAGGATCGCGATAGGGAATAGAGAATGTGTGACTGGATCTT
AGGGATGAGTAGTTGA
>LE_HBa0091F14_SP6_95114 (trimmed for quality and cloning vector)
TTAGGGAGGGCTGGTGTCTTGAGGTATCAAGGAGTTGTGTGTTCCCAATGTCCATGATTTTTGGAACCGAATTCTTGAGAAAGATTATGGGTCCCGTTTC
TCCATTCATCCAGGTTCAACAAAGATGTACCATGACCTTAGGGAAGTGTTTTGGTAGTAATGTTCTAAAAAGGACATAGGAGAATTTGTTGCTAATTGTC
CAAATTACGAGCAAGTGAAAGTTTAACATCAATAGCATAGTGGTTTAATTTAGGAAAACTAAATTACTACTTGGAAGTGGGAAGACATCAATATGGATCT
GTAGTAGGTTTGCCTCAGACACAAAAACAATATGACTCCATATGGGTGGTTATGAATAATTTGGCCAAATCCTCTCAATGTATTCCCATAAAGTCTACTT
ATTCGGCGGAGGATTATGAAAAGATCTTCAAAGATGATGTTGTGTGTCCCAATAGTATTCTGTTATCTATCATATCGGATAAGGGTTCACAATTTTCACA
TCCGGATTCACCCCCTAAACATAACCTGTGTGGTTGTCCTTTTTAAGAACTAAGACTATTTCCTTAGTCTTATGTCATTACATTCATGGGTTGAAAATAC
GGAAAAATTTAAAAAATTTCATTACATCTACTTGGAGGTTTACGTTAACCAATACAATACACATA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.9483
Expected error %
0.211074
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39297.1| Score 105 E Value 7e-37 Identity 60.20% Align. Length 494bp (74.29%) Frame 2
putative gag-pol protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38790.1| Score 101 E Value 2e-30 Identity 56.80% Align. Length 406bp (61.05%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0091F14
Clone
Clone name
hba-91f14
LE_HBa0091F14
P091F14
Clone type
BAC
Contamination
none
Estimated length
113,572
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found