Clone Read LE_HBa0046K11_SP6_94580

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0046K11_SP6_94580
Primer
SP6
ID from Seq. Facility
LE_HBa_046_K11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 2126 raw
Sequence
>LE_HBa0046K11_SP6_94580 (raw untrimmed)
GCCGGCGAGCAGTGAGGGGACGTGTATCATCTATGCTGCTNCGNCGTGATAGCGATGATGAGTGNACTGATGTGATAGCGCGTGTACGNCTAGCATAGAC
ATATGAGAGCAGCAAGAGGCGAGCGACATCNACNTCNNAGTNNNGTANACNANTACTATCNATCTCGCAGTCAGACACAGCATAGAGACACACAAANCAG
CNGACGNTANACNCTATGGCCCCCACACCGTGAGCGANTGNTGACNTGTAACAGATCTCTGAGTAGTGCTGTAAATTTGATCATTGNCANAGTGAGNTTT
AGATAGCNTCGTTGTANANCNTCGGAAANATNTAGCGANTCACTCATCTGTACACATATNTANCGCACTCACNGCTATACAGAGAGTGANGNTNGANANT
AGNGGTNANATTAATGTGCTNTGACTATTGCNTGTGATACATTNCATTTNCTNTAGACACGAAGCTTGTTGANTACATCTGACAGAGCTAACGAATNGCA
NCATNATGTGCATNAGCGCTNTAGCGTNANCGCGGCATTNTNCGTCACACACTATCAGCGGACTGNCACANCGTNCNGCGNCTCTCTGTAGCAATNGTGT
GAGAGCGAAGAAGGACACGTGCGAAGGGAGGNACGACACGNACTGCACANGTATATAGCATCGANGACAGTAGTNTNTCGACANCANTGACTATGACAGT
NGATTCGATGCAGTGCACTGTGCTGTGCTCATNCGTGACACACCACGCGAGGCCNCGCATGCACACGTGNAGTGCAACTGTANAGTCTTCACTCTTACAT
ANANCTGACACGTGTGTGCGCATTGTGATANACACACATAGCATNANGANGAAATNACGCANCTGTAACGCGCTGTACTATGAGAGCGAGCGAAGCGGTC
TTNAGANGANGACTACTANGTGACGACCGCTGCTGCGTGACCANCNATTTGACACGCTATCGCTACGCATACATCATGCNCANACGCANCTCCTNCGCAC
TGATATNCGAGCATACAGACACAAGAGCGATGCATATCACTACAACNTACCTAGACATNGCACGACACACAGCTGTGCTNACCTNGCGACTCCNAGCTGA
CACTNACCTGANGTGCGAGCGCGCTACACTGACTCGCTAAGCATTATCAGTGTTNGCACGCANGANAGTGNTNGANGACTAGTCGTGTGTGTCGAGTGAT
CACGCGNCTACGNGCTAGCGCTGGGTCATGTGACAGCTGACACNCTTACGANCTGACTGTTATNGCTGCGGTACGCCNATGCGCATTCGCGCCACATCGT
GACTGCTGCGTTGCGACTTGATTACGAGTGACTCTGCTACTATCCACCCTGCGCATGACNCNAGCTGGCACTGACGACTTGCGCATCGACGNCGTGCTTG
CACCTCATGCTACACACGACGCCTGCGATGATNATNGCTGTATGCGTTATGCGACTGATCCNACACGTTCGACTNGCTTTTGTGAATTCTTGATATATCT
NAGTTCATACGACATATACTAGACATATATTATGAGACATGTATCAATCAGACGCAATAGTGGACACTCAGTCTTTNAGCATATGCCTGACGCTGNCTGA
TACGTACTANATGACGTNGATGCTACTGNACTCTGTGATCGTATATACATNCTGGCGCGCGTAGACATGATGCTNACATAACACGCAACAGACGTGAGAG
ATTACACACGCGTAACCTGCTGTGTGANTGACTACATCACGNGTGTACGCANCTGCACGATGATACANGNCGATGACGGCGGACTCTACATACCACGTAC
CTGCATAAATATGCATGCAAGATAGTCACGCGACCTAGGTACNCAGAATCTGNGACCACGCTGGTCTACAACCGATNGATGATAGTNACACAACACGACG
ACTGACACATTGCACACACATNCGCGAGATACCGCACGANTAAATNANATGNTGACTACAGCATCTGCATGAAGACACGTATGACTGCTTACTATNANAC
TGCATACACACGACACACACACCTGCGNCGTTGCGTCGATAACTGTGGACGTGATATNTGTTGCANAGTACTGAANCGTATACAGACATGATAATTCATN
TNATCTACGTGACTTCACCCTCAGCA
>LE_HBa0046K11_SP6_94580 (trimmed for quality and cloning vector)
GAC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
3.0796
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0046K11
Clone
Clone name
hba-46k11
LE_HBa0046K11
P046K11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found