Clone Read LE_HBa0046E04_T7_94279

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0046E04_T7_94279
Primer
T7
ID from Seq. Facility
LE_HBa_046_E04-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
721 trimmed for vector and quality, 970 raw
Genbank Accession
DU055966
Sequence
>LE_HBa0046E04_T7_94279 (raw untrimmed)
GCAGACGCGGGTCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCGGCCGACCTGCTTTCAACCCCCCTTCTCGAATGACTTGTGGGACAG
TTGGGGGACGGGGACGCCCCCTCCCATGCTGTAAGACGCCACAAACTATAAGAGTCAATAGAGGAGAAAAAGAGAGAGATACCATGAGAATTTGCGCAAA
TGACTCATTTACCAGATCATGTAAACCCTTGAAAGACCAGGGATGCGGGTAAGTTAGAGGACGATCCATTCTGAAGTAATCAGCATCATTTCCCATTTCA
GCAAAACATATGCTGCAGAGATCGTAGTTCTCCTTCCTACATGGCATAGTATGGCTATATCATCTAATGTCGGTTCAGATAAAAACAACTAATAAATACA
ATAACAGGGTCCTTACACTTTAGATATGAACCTAGGTCCAGTTATCGGATGAACCCCACAACCATCACAGCGAACACCTTTATGGAAAATAGTCCCAGTC
CCATCACTGTGATTATGGCTCCTTTTAAGTGGGACCTCAAAAGAGAAGTTCTGAGGTGGAATAGGGTTATTTTCTGTTGGCATCCCAGAAAACGGACACG
CATTCACAGGAATCAGTGGACCTAGATGACGTACAGCAGGTATGTAGCCATCATACGGCATCTTCATTGAACTGGCACTGGAACCTGCATTATGGGAATC
CATTAACATTTACAGTGTTCAGATGAACTACATTGTGAAGGGGTGAAGCATCTTAGGGTATGTTGATTAAACTGCCACTGTAATCTGCATTAAGGGAATC
CCAGTTGCATGTTTTCAAATTCTGGAACTTGCAAGCTCACCCAAAATCACCTCGGTTAGCTACCGGATGCCCTTGCTGGGGTGCTCCTCAAGTCTTTTCT
GTGGAAAGGTGATCTCCTTGAAATTCACGCTAAGATCAGTTCTCCCAGCTTGCATGTACATCTTCTCCTC
>LE_HBa0046E04_T7_94279 (trimmed for quality and cloning vector)
AGCTTCGGCCGACCTGCTTTCAACCCCCCTTCTCGAATGACTTGTGGGACAGTTGGGGGACGGGGACGCCCCCTCCCATGCTGTAAGACGCCACAAACTA
TAAGAGTCAATAGAGGAGAAAAAGAGAGAGATACCATGAGAATTTGCGCAAATGACTCATTTACCAGATCATGTAAACCCTTGAAAGACCAGGGATGCGG
GTAAGTTAGAGGACGATCCATTCTGAAGTAATCAGCATCATTTCCCATTTCAGCAAAACATATGCTGCAGAGATCGTAGTTCTCCTTCCTACATGGCATA
GTATGGCTATATCATCTAATGTCGGTTCAGATAAAAACAACTAATAAATACAATAACAGGGTCCTTACACTTTAGATATGAACCTAGGTCCAGTTATCGG
ATGAACCCCACAACCATCACAGCGAACACCTTTATGGAAAATAGTCCCAGTCCCATCACTGTGATTATGGCTCCTTTTAAGTGGGACCTCAAAAGAGAAG
TTCTGAGGTGGAATAGGGTTATTTTCTGTTGGCATCCCAGAAAACGGACACGCATTCACAGGAATCAGTGGACCTAGATGACGTACAGCAGGTATGTAGC
CATCATACGGCATCTTCATTGAACTGGCACTGGAACCTGCATTATGGGAATCCATTAACATTTACAGTGTTCAGATGAACTACATTGTGAAGGGGTGAAG
CATCTTAGGGTATGTTGATTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.978884
Expected error %
1.10557
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g24690.1 Score 61 E Value 1e-19 Identity 46.20% Align. Length 424bp (58.81%) Frame 1
68417.m03534 ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein contains Pfam profiles PF00627: Ubiquitin-associated (UBA)/TS-N domain, PF00569: Zinc finger ZZ type domain, PF00564: PB1 domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP37784.1| Score 61 E Value 6e-18 Identity 46.20% Align. Length 424bp (58.81%) Frame 1
At4g24690 [Arabidopsis thaliana] emb|CAB79379.1| putative protein [Arabidopsis thaliana] emb|CAA22994.1| putative protein [Arabidopsis thaliana] gb|AAM98222.1| unknown protein [Arabidopsis thaliana] gb|AAM91159.1| putative protein [Arabidopsis thaliana] gb|AAL32905.1| putative protein [Arabidopsis thaliana] ref|NP_194200.1| ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein [Arabidopsis thaliana] pir||T05565 hypothetical protein F22K18.110 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0046E04
Clone
Clone name
hba-46e4
LE_HBa0046E04
C03HBa0046E04
P046E04
Clone type
BAC
Contamination
none
Estimated length
106,615
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found