Clone Read LE_HBa0038D20_T7_92727

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0038D20_T7_92727
Primer
T7
ID from Seq. Facility
LE_HBa_038_D20-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
576 trimmed for vector and quality, 898 raw
Genbank Accession
DU055410
Sequence
>LE_HBa0038D20_T7_92727 (raw untrimmed)
CCAAGATGGGACCGGGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTATAAATGTCTTAGGCGCCTATGCATAGCATCTCTCGAGATTACAAAC
AACCTAAATCTTGACAACAATTCAATAGCACAAGAATGAGCTAGCAATTGACAACAAATTTGATGGCACTAAATTAATTAGCAATTGACAAAGTTAATGT
AGCTGTGAACTTGCCAAGTATTCAAGAAGTTGTCGATCATCATTTATCCTTGCCTCAGCAACGTCCCAGCAGCCCTTTTCTGCTAGCTTCTTCAGTTTAC
TGTAAACTAATACTGTCATTCAGTGTTCATAAAAATTAGCTGAAAGGTTAAGTGACACAAAGTGGATGGAATCCACTTGCCTTTCTTTGTATTGACGATA
TATTTCTGGGAACTCCTCCCGAATATTGTTTTGCCTTATAACATCAAAGGCGTGCTTTAGTAGTTTTCTGTTGACGTATTCTCGGACAAGGGTGCATAAG
ATTGGCTTCCCCATAAAAGTTGCCCACTTTTCTGCTGCTCTGTATTCTTTGCTTTCCAACATTTTAAGCAGAAATGATTCGCCAGATTCCCGGAAGGAGA
AGTGTCCCAACAATGAAACTGCAGTCATGCAAGACTGGCAATCCTCTAACTTATAAAATATTGCTCATCTCATACCTTAGCCGTCTGGTATTGGGTGACC
CTTAATACTTTCTTATTACTTCTCTTTCCTTTTTTACTACAAATAGCAATAAAAACCATTAAGACCTTATACCATAACTCTCTCATCATTACCAATGTCC
GACTGCATAATAACTATCTATTAGGTCCAAAAGATCACCACTATGGATACGATCTGTATTTAGCAATCCAAAATACAAAATAGAGGTTATTAAACTTT
>LE_HBa0038D20_T7_92727 (trimmed for quality and cloning vector)
AGCTTATAAATGTCTTAGGCGCCTATGCATAGCATCTCTCGAGATTACAAACAACCTAAATCTTGACAACAATTCAATAGCACAAGAATGAGCTAGCAAT
TGACAACAAATTTGATGGCACTAAATTAATTAGCAATTGACAAAGTTAATGTAGCTGTGAACTTGCCAAGTATTCAAGAAGTTGTCGATCATCATTTATC
CTTGCCTCAGCAACGTCCCAGCAGCCCTTTTCTGCTAGCTTCTTCAGTTTACTGTAAACTAATACTGTCATTCAGTGTTCATAAAAATTAGCTGAAAGGT
TAAGTGACACAAAGTGGATGGAATCCACTTGCCTTTCTTTGTATTGACGATATATTTCTGGGAACTCCTCCCGAATATTGTTTTGCCTTATAACATCAAA
GGCGTGCTTTAGTAGTTTTCTGTTGACGTATTCTCGGACAAGGGTGCATAAGATTGGCTTCCCCATAAAAGTTGCCCACTTTTCTGCTGCTCTGTATTCT
TTGCTTTCCAACATTTTAAGCAGAAATGATTCGCCAGATTCCCGGAAGGAGAAGTGTCCCAACAATGAAACTGCAG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.965895
Expected error %
0.264659
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g56310.1 Score 124 E Value 3e-29 Identity 15.70% Align. Length 407bp (70.66%) Frame 3
68414.m06473 3'-5' exonuclease domain-containing protein contains Pfam profile PF01612: 3'-5' exonuclease
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_176027.1| Score 124 E Value 1e-27 Identity 15.70% Align. Length 407bp (70.66%) Frame 3
3'-5' exonuclease domain-containing protein [Arabidopsis thaliana] gb|AAG50917.1| 3'-5' exonuclease, putative [Arabidopsis thaliana] pir||H96604 probable 3'-5' exonuclease [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV43946.1| Score 102 E Value 5e-21 Identity 12.70% Align. Length 407bp (70.66%) Frame 3
unknown protein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0038D20
Clone
Clone name
hba-38d20
LE_HBa0038D20
P038D20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found