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Clone Read LE_HBa0029N19_SP6_92436

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0029N19_SP6_92436
Primer
SP6
ID from Seq. Facility
LE_HBa_029_N19-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
724 trimmed for vector and quality, 936 raw
Genbank Accession
DU054733
Sequence
>LE_HBa0029N19_SP6_92436 (raw untrimmed)
CCCGCTTTTTCTTCCACGGAAGCTCCTCTGGATCAGAGTCGCATACCATTTTCAACTGAGTTGAAACCTCATCAATATATTCCTTAATAAGTCTAGGCAC
ATGAAGCCTTCCCTTGTGAAGTTCTGAATTGCACATATTACCAAGATTCCTTACAAGGTCAGCTCTCATACAGAAAATGATATCTCTCAGAGAACCCTCT
TGCCTACGATGTCGAAGCTCTTGAAGTTTATTTCGAACTAATTCTTCATCATAAAGATCTGCCTCATTCAATTTAGGTGTCTCTTTATCCAACATCTTAG
CAGCATGAGCCCACTCCTCATAAGTCAAGGCAGATCTCATCATATTCCTCCAAAACTTCCTCCTATAAGCCATCTCAGCCTTAACTTTTACATTAGTATA
CCGCCTCAACAAGAAGGCGAGAAGCGTTACTAATGCCAATATCCCTTGTGGATTGCGAGGGTGCAACCACGAAATCAAAGGTGTCACATAGTACGAAATT
CCACTCTTAAACTTGTACAAGTAATACATCAAGAAATGAAACAATCGATGCCTCAACTGCGTAATCGACTTGCAAAACAAGACTCTAAAGGCAATTGTTC
GACCCAATATCGTAGAAGGTCCAATAGCAAAGAAGTCAATAGTAGCCTCATTACTTATATCCATCTCAAATGGACAAATGAACTGGTTCCAATAGGTTGC
TCAGCAAAATGTTAAGACAAGCAATACACAAATACCTAATAATCTAAAGGCTCTAAACTTATAACCAATTGAACAAGATTAGCACAACAAAGGTCTGTAC
TATCTCTGAATATCAAAGTAACACAGAAACTAACGATACTCCTGACAAAGGTATTCACAAGATTCCAAGTAATCAGATTGACCCGAAATTAACAAACCAA
GTAAAAGTTCAGGAATGACCTACTAAATCAAAAAAA
>LE_HBa0029N19_SP6_92436 (trimmed for quality and cloning vector)
GCTCCTCTGGATCAGAGTCGCATACCATTTTCAACTGAGTTGAAACCTCATCAATATATTCCTTAATAAGTCTAGGCACATGAAGCCTTCCCTTGTGAAG
TTCTGAATTGCACATATTACCAAGATTCCTTACAAGGTCAGCTCTCATACAGAAAATGATATCTCTCAGAGAACCCTCTTGCCTACGATGTCGAAGCTCT
TGAAGTTTATTTCGAACTAATTCTTCATCATAAAGATCTGCCTCATTCAATTTAGGTGTCTCTTTATCCAACATCTTAGCAGCATGAGCCCACTCCTCAT
AAGTCAAGGCAGATCTCATCATATTCCTCCAAAACTTCCTCCTATAAGCCATCTCAGCCTTAACTTTTACATTAGTATACCGCCTCAACAAGAAGGCGAG
AAGCGTTACTAATGCCAATATCCCTTGTGGATTGCGAGGGTGCAACCACGAAATCAAAGGTGTCACATAGTACGAAATTCCACTCTTAAACTTGTACAAG
TAATACATCAAGAAATGAAACAATCGATGCCTCAACTGCGTAATCGACTTGCAAAACAAGACTCTAAAGGCAATTGTTCGACCCAATATCGTAGAAGGTC
CAATAGCAAAGAAGTCAATAGTAGCCTCATTACTTATATCCATCTCAAATGGACAAATGAACTGGTTCCAATAGGTTGCTCAGCAAAATGTTAAGACAAG
CAATACACAAATACCTAATAATCT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.963796
Expected error %
0.0736539
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g04040.1 Score 337 E Value 3e-93 Identity 25.40% Align. Length 641bp (88.54%) Frame 3
68418.m00384 patatin-related contains Patatin domain PF01734
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g57140.2 Score 307 E Value 3e-84 Identity 23.70% Align. Length 641bp (88.54%) Frame 3
68416.m06362 patatin-related contains Patatin domain PF01734
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB85524.1| Score 337 E Value 1e-91 Identity 25.40% Align. Length 641bp (88.54%) Frame 3
putative protein [Arabidopsis thaliana] gb|AAM97135.1| putative protein [Arabidopsis thaliana] ref|NP_196024.1| patatin-related [Arabidopsis thaliana] pir||T48431 hypothetical protein F8F6.250 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB72184.1| Score 307 E Value 2e-82 Identity 23.70% Align. Length 641bp (88.54%) Frame 3
putative protein [Arabidopsis thaliana] dbj|BAC42559.1| unknown protein [Arabidopsis thaliana] gb|AAO64904.1| At3g57140 [Arabidopsis thaliana] ref|NP_191273.1| patatin-related [Arabidopsis thaliana] ref|NP_974449.1| patatin-related [Arabidopsis thaliana] pir||T47774 hypothetical protein F24I3.220 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0029N19
Clone
Clone name
hba-29n19
LE_HBa0029N19
P029N19
Clone type
BAC
Contamination
none
Estimated length
37,549
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found