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Clone Read LE_HBa0047I08_SP6_9230

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0047I08_SP6_9230
Primer
SP6
ID from Seq. Facility
LE_HBa_047_I08-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
799 trimmed for vector and quality, 931 raw
Genbank Accession
DU028353
Sequence
>LE_HBa0047I08_SP6_9230 (raw untrimmed)
TTGTCAATAATATCATTGCTTCATCTAGATCTTATAAAAAATAGTTCAATAAACGATTATGGCATATCTTTTCGCAGTTTTTGGTGAAAGTATCATGGCT
GAAAATGTCATAACTGATAAGGTTGTTGGTGAAAGTGGAGCTTCTAATTCAAATGCAATAGATCAAAGTCAAATTGTTGAGTCTCAAGTAAAGAAAGGGA
GGAAAAAAAGATCTCGTGCGTGGGATCATTTTTCTCGTAAAACTGATTCTGATGGAAATGAAAAGGGTGTTTGCAACTACTGTAAGAAAGAGTATTTTGT
TGATACAAAAGAACATGGTACGACGTCAATGCTTAATCATACATCCAAATGCCCTAAGATGCCTTATAACATTGATATTAGACAATCAAGATTAGCATTT
CAACCAATGATAGGTGGTAACAAGGGTGATGTAGTTGTTGTTCCATGGAAATTTGATCAGGAAGAGTGTAGAAAGGCCTTGTGTCGTATGGTAATTATTG
ATGAACTTCCTTTTAGATTTGTTGAAAAAGAAGGTTTTAAACAACTTATGAAAGTAGCACAACCTTGTTTCCACATTCCTTCTCGTACCACTGTGACTTG
TGATTGTTTTAATCTTTTTGATGAAGAAAAACATAAGTTGATGGTTATTTTTAAGGGAAGGGAACAAAGGGTGTCTTTAACCACTGATACTTGGACTTCC
ATCCAAAGAATTAATTATATGGTCATTACTTCTCATTGGATTGATAAAAATTGGACTTTGCATAAAAGAATTATCAATTTTTGTCCAATCACTAGTCATA
GAGGTGAAGATCTTGAAAAGTCTATTAGTAAGTGCTTTAATGAGTGGGGATTGCATCACATTTTCACTGTTACAGTTGATAATGCTGGTTCAAATAGTGT
GGGAATAACTGAGTTGTCTAAGCAATTACTA
>LE_HBa0047I08_SP6_9230 (trimmed for quality and cloning vector)
TGCTTCATCTAGATCTTATAAAAAATAGTTCAATAAACGATTATGGCATATCTTTTCGCAGTTTTTGGTGAAAGTATCATGGCTGAAAATGTCATAACTG
ATAAGGTTGTTGGTGAAAGTGGAGCTTCTAATTCAAATGCAATAGATCAAAGTCAAATTGTTGAGTCTCAAGTAAAGAAAGGGAGGAAAAAAAGATCTCG
TGCGTGGGATCATTTTTCTCGTAAAACTGATTCTGATGGAAATGAAAAGGGTGTTTGCAACTACTGTAAGAAAGAGTATTTTGTTGATACAAAAGAACAT
GGTACGACGTCAATGCTTAATCATACATCCAAATGCCCTAAGATGCCTTATAACATTGATATTAGACAATCAAGATTAGCATTTCAACCAATGATAGGTG
GTAACAAGGGTGATGTAGTTGTTGTTCCATGGAAATTTGATCAGGAAGAGTGTAGAAAGGCCTTGTGTCGTATGGTAATTATTGATGAACTTCCTTTTAG
ATTTGTTGAAAAAGAAGGTTTTAAACAACTTATGAAAGTAGCACAACCTTGTTTCCACATTCCTTCTCGTACCACTGTGACTTGTGATTGTTTTAATCTT
TTTGATGAAGAAAAACATAAGTTGATGGTTATTTTTAAGGGAAGGGAACAAAGGGTGTCTTTAACCACTGATACTTGGACTTCCATCCAAAGAATTAATT
ATATGGTCATTACTTCTCATTGGATTGATAAAAATTGGACTTTGCATAAAAGAATTATCAATTTTTGTCCAATCACTAGTCATAGAGGTGAAGATCTTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.945958
Expected error %
0.0398611
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB82966.1| Score 164 E Value 2e-39 Identity 13.20% Align. Length 671bp (83.98%) Frame 2
putative protein [Arabidopsis thaliana] pir||T48044 hypothetical protein T12C14.220 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP51893.1| Score 157 E Value 4e-37 Identity 12.70% Align. Length 635bp (79.47%) Frame 2
putative Tam3-like transposon protein [Oryza sativa (japonica cultivar-group)] ref|NP_919606.1| putative Tam3-like transposon protein [Oryza sativa (japonica cultivar-group)] gb|AAL31650.1| Putative Tam3-like transposon protein [Oryza sativa]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0047I08
Clone
Clone name
hba-47i8
LE_HBa0047I08
P047I08
Clone type
BAC
Contamination
none
Estimated length
60,851
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found